RNA id: AMCG00001837


Basic Information

Item Value
RNA id AMCG00001837
length 2629
RNA type mRNA
GC content 0.51
exon number 17
gene id AMCG00001837
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17074216 ~ 17092598 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGCACTATAGCTACCTGTGTTGACCGATGTGCGGTGCGGATGGATGCGGTTCAGGTGGATGCGGTGCGGGTGGATGTGGACACTTTATTCATTAAGATCAAGTGCTGCGACTGTGTTATTTTCCGCGCTTGCGTGGTCAGTAAAGTTGTAAGTTTGTAGCCGTGATTTCTGCTGGAGCGTCGCTGTTACATTGCAGGACAATGACAGCCAGACCCCCTGGAAGGCACCAGAAAAGCACCCTGCCCTCCATCCTGGAGGCGTACCTACCAGCGGACCATAAGAAGCAGACGGACGCAAAGCAGTCTAAGAAGAAGGACAGGAGGGACGAGGCCGGTTTCGTGAAAAATTCCCACATCGGTGAAGAAGACGAGGAAGCTAAAGTCCTGAAGCAGGCGATGCTCGATCAGCGCCACCTGGAGGCCTATAAGAACGTGCACCGGCTCAGAGACACCCTGCACCGCCACTACACCAACCTGTTACAGGAGAAGGTCCACAGACAGAGGCAACAGATGCAGCAGCGCACCGTTTCAGTCCAGAGACCCCCAGAGAAGGACGCTGGCCAGtctgtATCAGTGTCTGTACGCAGACTGGCCTCTTCCACGCTTTGTCACGATGACCAGTATCTGCAATCACTACCCAAATCCAGCTATTACTTGATCATAGATCTCCAGAACCACTTGACTAGTTGTGGGTTTCTGAAGACCAGGCAGGACCAGGAGGAATTCTGGAAGCTGGTCCAGCAACACCGGCACTCTGCCCAGCTGAGGGCACGACTCCAGGATGTCAAAATGAGGAGTGACTGGATATAGATCTGCTCCAAGTTTCACTCTCAGAACAAGTGCTGAAGATGCACTTGGTCAACCAAACACAATTCATCTTGGCCACATGGAGGAATCGCTCCAGAATGCTCTTTCAGAGAGCGGCGACGCCTGTGAAAGCAGCCCCCATCATCCGAGCAAACAGAAGAAGGAAGACGACGAAATTGAGCAAATGTTTCCCAAGCTAAAGGTCCCCAAGTTTATTACACTCCAGCCAGGCTTCGTGAAGCAGTGCAAGGCCCTGCATGAGCACAAGATCCCCGAACCACTGCAGAGGAGTAAGACCAGAGAAGTCAATCTCGGAAAACTTCACCTCATGTACAGCCTGTCCCTTAGCAATATGGCGTCCACACAAAGACTGCTGGACCGAAATGGACAGTTTACAGACTTCAGAGAGGAGTCCAATGCACACAATCTGAGGCACTACCTGTTCCCCAGTGAAAGTGGGTTGAAAGGAGAGCAGTTTCTCCCCCGTCTGTGTCCCGCGCTGCTCCCTGCACCCAGCGTCGCGTCTCCTCTCGCACCCGCGGGGCTGCCTCAACACGACACCGCCCCGGCCAACGTGAGGCCCACGGCTGCGGGGAGCTCTGTTGTTGAGAGTGAGAGAGGTCCGTCTCAGTCCCCGGACCCTCTGACCATGGAGGAGGTCCGCCTGAGAAACCCTGTGAAGGAAGTGAAGCGGCCTGACAAACTGTGGATGAATTATGTCAGGGATGCCTCCAGCAAACCGACGCTGATGATTAAAAGCGTGCACTGTGACCACGACACGGGCTAGTTGATTACAGAAATCGATTCACCAAACCTACGAGGAGACACGAGTGTAAATTAAAAGACCAAACTATGGACTTCGCTTCTCATTCTAATTCCTTTGGACCAGACTGATGTGAAATGGAGATCTCGCAGCAATCCATGTATGCGTGTGTTTTGGACATGCGTGTTCTGCGAGAAACCACCATCACGGGAAAAGAACCGTCTAATCCCAGTTGTGCTGTTGTCATTAGAAATCAATTGTAATGTTTGCagtcatttgtttgttttatgcttgATCTGTGAGTAGAAAAGTTTCTTGTATGAATGTTCTGCATTTCATTCTGTAAAAGGTGGTACACAAATAATGTAACTGTACTTTAtttcataatacaattaaatgtgtaaaaagtttttatatacaaataaacttgGCATTATTAGGAGTGGTATTATTCACGTTCTTACAAACAATTGCACAGTTAAACTAGAAAATAAGTTTTGCACTCTTTGAcatgatgaaaaataatgaaaaatccCGCACAGCTGGTGTCAGTCGTCCTGTTCTGCCCATCAATCATTTCTGCCCCGAGAAGAAAATCTGCCAGCctttatttaattctgcaaaCTCTATCCCGGTTTTTAATGGCCAGCTGGATGTTCTGGTTCAAGCAAACCGCCATGTGCTCAACTGCGCGCAGAGAGCAGCGCATCTGCCGCAAAGcctgcagctcctcctgcaActcttcCAGCTGGCCGTCAGCCTGGCCCACTGCAGCACCGCGACTGGGCCGAGCCCCGGACATGGcaccctgtgtgtgtggagggtgAGCGGCTACTTTACGCTTTTACTTTATTATCAGAAATGCAGGAACAGCCGCCCGACTGCAGCCCAGACCGCGCCAAACAGCCAGGCGCGACCAGCCGAGCGCACAGAGCATCGATTGCGGCCACAAAGACGGCGCCAAAGCAAGACCAAACCAGTCGAGTCCGGAGAGGATCGATAGACGATGCCTTGAGAGATCAGGACAATTGATTCTAGATTTCACTTTCAATATTAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202248 lncRNA upstream 164183 16905249 ~ 16910033 (+) True G160649
TU202247 lncRNA upstream 171776 16899895 ~ 16902440 (+) True G160648
TU202122 lncRNA upstream 796162 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 954950 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 959517 16114344 ~ 16114699 (+) True G160463
TU202349 lncRNA downstream 87119 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 315659 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 705601 17798199 ~ 17804178 (+) True G160869
TU202542 lncRNA downstream 767564 17860162 ~ 17861427 (+) True G160895
TU202559 lncRNA downstream 824197 17916795 ~ 17917054 (+) True G160910
AMCG00001836 mRNA upstream 3558 17069882 ~ 17070658 (+) True AMCG00001836
AMCG00001831 mRNA upstream 7715 17055481 ~ 17066501 (+) True AMCG00001831
AMCG00001830 mRNA upstream 65747 16995655 ~ 17008469 (+) True AMCG00001830
AMCG00001819 mRNA upstream 97256 16969820 ~ 16976960 (+) True AMCG00001819
AMCG00001818 mRNA upstream 122705 16946524 ~ 16951511 (+) True AMCG00001818
AMCG00001839 mRNA downstream 1966 17094564 ~ 17098333 (+) True AMCG00001839
AMCG00001838 mRNA downstream 51643 17144241 ~ 17160791 (+) True AMCG00001838
AMCG00001840 mRNA downstream 84617 17177215 ~ 17179413 (+) True AMCG00001840
AMCG00001841 mRNA downstream 86996 17179594 ~ 17181775 (+) True AMCG00001841
AMCG00001846 mRNA downstream 353334 17445932 ~ 17446842 (+) False AMCG00001846
TU202141 other upstream 701912 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 778710 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1635185 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1739649 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2804026 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 324753 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1095304 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1123977 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1577684 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 1806739 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile