RNA id: AMCG00001840



Basic Information


Item Value
RNA id AMCG00001840
length 957
RNA type mRNA
GC content 0.53
exon number 5
gene id AMCG00001840
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17177215 ~ 17179413 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGGGTTGGAAAAGGCCCACAAGGCAGACATCCTGGCGTACAGCTCTGGGCACCTGAACCACAACAAGCTTCCTAAACTGACTGTGCCAAAGGCTAGCAATGCCGCCATATGGGAGAGTTCAAGAGCAAGTTCAAGAGCAGCAAACCTGACAAGTGGGCCTCAAGTCAGGTTGGGTCAGAAGTCAGTGGACGCTATGGCGAGGAGGATGAAAGAAACTCTGTGTGATTTCACTGCCAAAACCAGTTTGACCCCAGACGTCTGTCAATCCCCAGAGATGGAAGACCTTGGTCTGCACACAAAGAGAAGCACTCCACCTCGCACACATTTCAGAGCAAGGGAGTCCCTGGACCCATTTGAACTGCTACTGCTGAAACCCCAGAGGACCGAGGGGATCTCCACCGAGCGCAGCGGAAAGGACCAGTATCGGTTCACCCCGTCTCATCTCGCGGGCTTGACCAGAAAGGACCAGTTCAGACTGATGCAGGAGTTCGATAAAGAGGTCCTGAAGACCCAAGATCTGAAGGAGAGGAACGTAATGACTTGCCACAAGGCTGCCGAGCACCACGAGAGGAAACTGGCCCAGGAGCTGATGAGGGTCTCCGCGGCTGGTTGGTCGAGTTCCTCCCACATGAAGGTGTGCAGTGAGAGCTTCACCGACGTGTGTGACGCCTCACCAATCTTCAGGGAAATTTTGAAGGAAATTAAGGTGGAGTACGACCTGTACCTCCATTCAGTCCTCGAAACCCAGCTTGAATGTCAGAATGAGTCACTGCTGATGCCAATCCACGGCCTGGAGAACCAGACCGCCATGACACAGGAAGTGGAAAGAGCCAGACAGGAAGTCCAGAGACTGGGAGAGGCGGCAAAGAGAGCAGTGGAGGAGAACCAACAACTGAGGAACGAGTTGCAGATTGAACTATTAAAGACCGAGACCCTTGAAGACGAAGGCAAGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202248 lncRNA upstream 267182 16905249 ~ 16910033 (+) True G160649
TU202247 lncRNA upstream 274775 16899895 ~ 16902440 (+) True G160648
TU202122 lncRNA upstream 899161 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 1057949 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 1062516 16114344 ~ 16114699 (+) True G160463
TU202349 lncRNA downstream 304 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 228844 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 618786 17798199 ~ 17804178 (+) True G160869
TU202542 lncRNA downstream 680749 17860162 ~ 17861427 (+) True G160895
TU202559 lncRNA downstream 737382 17916795 ~ 17917054 (+) True G160910
AMCG00001838 mRNA upstream 16424 17144241 ~ 17160791 (+) True AMCG00001838
AMCG00001839 mRNA upstream 78882 17094564 ~ 17098333 (+) True AMCG00001839
AMCG00001837 mRNA upstream 84617 17074216 ~ 17092598 (+) True AMCG00001837
AMCG00001836 mRNA upstream 106557 17069882 ~ 17070658 (+) True AMCG00001836
AMCG00001831 mRNA upstream 110714 17055481 ~ 17066501 (+) True AMCG00001831
AMCG00001841 mRNA downstream 181 17179594 ~ 17181775 (+) True AMCG00001841
AMCG00001846 mRNA downstream 266519 17445932 ~ 17446842 (+) False AMCG00001846
AMCG00001856 mRNA downstream 339291 17518704 ~ 17520528 (+) True AMCG00001856
AMCG00001853 mRNA downstream 348328 17527741 ~ 17531215 (+) True AMCG00001853
AMCG00001854 mRNA downstream 353038 17532451 ~ 17543361 (+) True AMCG00001854
TU202141 other upstream 804911 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 881709 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1738184 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1842648 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2907025 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 237938 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1008489 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1037162 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1490869 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 1719924 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile