RNA id: AMCG00001842


Basic Information

Item Value
RNA id AMCG00001842
length 5743
RNA type mRNA
GC content 0.60
exon number 38
gene id AMCG00001842
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17165832 ~ 17182616 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttgtagcatgaattatttattgcttCAGAACAGAACTCATCTTTTGCTCAAATCTCATTGTTTGCCAGGGTCCAGAGCTCCCTGAAATATCAGCGCTAATCTTCATCTTGCGCAGTACTTCAGCTGTACCATTTACCAGACTCACTTGTGTCGCTCGTTGCAGGTGGTCGTTGGAGGTCAGCAGCTTCGTTACTTCAGCCTGAATCTCTGACGCAGCTCTCGGTTGTGCTGGTGGTGACGGCGGGAACCATCGTCTCTTTGATTTCTCTCTCAAGTGCTTGAACCTCTTCCCAAACGGCCGACACCTGGCGCCTCTGTAGCTGAACTCGCTCTATTATGGACAGGGTGCGATCCTTCTGTTTAACAGTCTTTATCGGCTCCTGGGGGATTTCTTCTTCAAGGGTCTCGGTCTTTAATAGTTCAATCTGCAACTCGTTCCTCAGTTGTTGGTTCTCCTCCACTGCTCTCTTTGCCGCCTCTCCCAGTCTCTGGACTTCCTGTCTGGCTCTTTCCACTTCCTGTGTCATGGCGGTCTGGTTCTCCAGGCCGTGGATTGGCATCAGCAGTGACTTCCATTCTGACATTCAAGCTGGGTTTCGAGGACTGAATGGAGGTACAGGTCGTACTCCACCTTAATTTCCTTCAAAATTTCCCTGAAGATTGGTGAGGCGTCACACACGTCGGTGAAGCTCTCACTGCACACCTTCATGTGGGAGGAACTCGACCAACCAGCCGCGGAGACCCTCATCAGCTCCTGTTTCAGTTTCCTCTCGTGGTGCTCGGCAGCCTTGTGGCAAGTCATTACGTTCCTCTCCTTCAGATCTTGGGTCTTCAGGACCTCTTTATCGAACTCCTGCATCAGTCTGAACTGGTCCTTTCTGGTCAAGCCCGCGAGATGAGACGGGGTGAACCGATACTGGTCCTTTCCGCTGCGCTCGGTGGAGATCCCCTCGGTCCTCTGGGGTTTCAGCAGTAGCAGTTCAAATGGGTCCAGGGACTCCCTTGCTCTGAAATGTGTGCGAGGTGGAGTGCTTCTCTTTGTGTGCAGACCAAGGTCTTCCATCTCTGGGGATTGACAGACGTCTGGGGTCAAACTGGTTTTGGCAGTGAAATCACACAGAGTTTCTTTCATCCTCCTCGCCATAGCGTCCACTGACTTCTGACCCAACCTGACTTGAGGCCCACTTGTCAGGTTTGCTGCTCTTGAACTTGCTCTTGAACTCTCCCATATGGCGGCATTGCTAGCCTTTGGCACAGTCAGTTTAGGAAGCTTGTTGTGGTTCAGGTGCCCAGAGCTGTACGCCAGGATGTCTGCCTTGTGGGCCTTTTCCAACCCCATCAGCAACTCTTTACGGGTGCAGTTTAAAACGTCCGAAGGCTGCCGTCGACTGTCCTGGTCAGCGCTCATGGCGTTGGCGGGTTACAGTCCGGGTGTTTTCTTGCCGGCAGAGACGTCCTGAGCCGCAGTCCTCTCCTCCCGGCAACCGTGTCAACAACGCAGCACTTCCGCGTGTGCGCACAGGACGCGttcgtgttgcgcagatgtccgcagttgcgcgcagatctgcagaatcccggCGCTCCCATTGAGGAGGTTCCCGGAAGACTTGCAGTGCAGCGGGATATCCACACGTGGAAACGGAGGGAGCTCCGGGTACCCACACAGAGTCTGCTGAACTGCGGGAGAGCTACGGACTGATAAGTCGGATCACCATGGCCGTGCTGCAGTTCTACAGGAGCGAGCCAGAGAGGGGGCGGAGCTTGCAGAGAGCCGCCCAGCTCCACCCGGACACGGACTTCCTGACCGAGGCCTGCTACAACGTGGAGTGGACCGGGTTGGAGCCCCCCAGTGCTGAGCAGAAGCGCATTCTGCAGTGGCTGTTCAGCCCGGGCCTGGACCCCAGCGCCGTGAGGGAGCAGCCGTTCCTCAGCCCCAGGGATGGACAGAGCAGAAAGCTGACGGACGGAGAGATGGATAGTCTGGTGGCCTCCCTGTTTGACAGGATGACTGAGTGTGTCTACTCGCAGCCAATCACGTCCTTCGCTGTGGAGACACGCCCACAGGCTGTGTTCGAAGTGGACATTCTAAAAGAGGGGCGCGCCGCCCTGGAGAGAGCCAATCAGGAGCTGGGGCTGGCCTTCGACAGTTGGGATCTGGACTATTACACTGCGCTGTTCCAGAGGGTCCGCAGAAACCCCACCAGCGTGGAGTGCTTCGACCTGGCGCAGTCCAACAGCGAGCACAGCCGCCATTGGTTCTTCAGAGGTCACGTGACCATCGATGGGCAGGAACAGGAAGGGACCCTCTTCAGCCTCATTATGGGAACCCAGCACCACAGCAACCCGAACAACGTCATCATGTTCTGTGACAACAGCAGTGGCATCCAAGGCCAGGAGGTGGAATGTCTGTACCCCGACGACCCGACCCAGGCCGGCCCGTACCGCCGCCTCCCCGCCACGCGGCACGTCATCTTCACCGCTGAGACGCACAACTTCCCCACAGgTGTTGCTCCGTTCAGCGGCGCCACCACAGGCACAGGGGGGCGTATCCGGGACGTCCAGAGCACAGGCCGTGGCGCTCATGTCATTGCTGGCACAGCGGGGTACTGCTTCGGCAACCTGCACATCCCTGgttatGCCTTGCCATGGGAGGAGGGTGCTTGGGTGTACCCCCCTAATTTTGCCCCGCCCCTGCAGATTGCTATTGAGGCCAGCAACGGGGCCGGTGAGAGGCGGGAGTGGATCAAACCCATTATGTTCAGCGGGGGAATCGGCTCCATCGAGGAGCAGCACGTTGAGAAAGAGGGAGCGAAACCAGgaaTGGAGGTGGTGAAGATGGGGGGTCCTGTGTACAGGATTGGTGTGGGTGGAGGAGCAGCTTCCTCCATACAGgtACAGGGTGACAATGCCAGTGAGCTGGACTTCGGCGCCGTGCAGCGTGGCGACGCCGAGATGGAGCAGAAGATGAACCGGGCGCTGCGGGCCTGCATCGAACGCCGGGCCGGGAACCCCGTGTGCAGCATCCACGACCAGGGGGCCGGGGGGAACGGCAATGTCCTGAAGGAGCTGAGTGAGCCGGCAGGGGCGGTCATCTACACCAGCAGGTTCAAGacCGCAGACCCCACTCTCAGTGTGCTGGAGATCTGGGGGGCGGAGTACCAGGAGAGTAACGCCCTGTTGGTTCGCCCTTCGGACCGTGACTTCCTGCAGAAGGTGTGCGACCGGGAAAAGTGTCCCCTGGACTTTGTGGGGACGATTACCGGCGACGGCAAGATCGTGTTGGTGGACGACCGTGCTGAGCCAGAGTCCGGGGGAGACGGGACACGGCATCCAGTAGACCTGCAGCTGGACTGGGTCCTGGGGAAGATGCCACAGAAGGAGTTTGTTTTTGAGCGGGTGAAGCCTGACCTCCAGGCACTGACGCTGCCCAACGACCTGTCGGTGCGCGAGGCTCTGGAGCGAGTGTTGCGGCTGCCGGCGGTAGCCAGCAAACGATATCTCACCAACAAGGTGGACCGCTCAGTGACGGGCTTGGTGGCCCAGCAGCAGTGTGTCGGTCCTCTGCACACGCCCCTGGCCGACGTGGCCGTGGTAGCACTGTCTCCCTTCAGCCGCGTGGGGGCGGCGACCGCGGTGGGGGAGCAGCCGGTCAAGGGCTTGGTGTCGGCCGCGGCTGGGGCCCGCATGGCGGTGGGGGAGGCGCTCACCAACCTGGTGTTCGCGCAAGTGTCTGCGCTCAGGGATGTGAAGTGTAGTGGGAACTGGATGTGGGCGGCAAAGCTACCAGGCGAGGGCGCAGCGCTGTGGGAGGCGTGTCAGGCCATGTGTGATGTCATGGCGCAGCTGGGCGTGGCCGTGGATGGGGGCAAGGACTCTCTGAGCATGGCGGCGCGTGTGGGGAGGGAGACCGTGAAGGCGCCAGgtgctCTGGTGATCTCAGTCTATGCAGTTTGCCCTGACATCACAGCCACCGTGACCCCTGACCTCAAGGACCCTGAGGGCAAAGGCGTGCTGCTGTACATCCCGGTGACGGCGGGGCAGTGGCGGCTGGGTGGCACCGCCCTGGCTCAGTGCTTCTCCCAACTGGGTGACAGTGCCCCGGACCTGGACCGACCCCAGAGCCTGGTGgcctgctttgaaagcacccaGAGCCTGCTGCAAGACTCTCTGATCAGCGCAGGACATGATGTCAGCGATGGGGGGCTCATTTCCTGCCTGCTGGAGATGGCCTTTGCAGGGAATCGTGGGATAGAAGTGGACCTTTCCCTGGGGGGCCCCGGAGtgctggaGGTCCTGTTCTCAGAGGAGCTGGGTCTGGTTCTGGAGGTGTCCGAGTCCAGCGTGGCTCAGGTGTGTCAGAGCTACACCGATGCCGGGCTGACCTGCCACAGGATTGGCCGGACCTGCGGGTTTGGACCCGAGTCCTGGGTCAGGGTGAGTGTGGCTGGACAGGAAGTCCTGAAGGAGCCTCTGCCCAGCCTCAGGGCATTATGGGAGTCCACCAGCTTCCAGTTGGAGAGGCTGCAGGCCAATCCGCAGTGTGTTCAGCAGGAAGAGGAGGGACTGGCCAGTCGTACAGCCCCCAGCTACAAGTTGACCTTTGACCCTGTGCAGACCCCGGCCGTCCTCAAAGACCTGGCCCAGGGACGCCCGCGAGTGGCGGTGGTGCGAGAGGAGGGAAGCAATGGAGACCGAGAGATGGCAGCCGCTCTATGGATCTACGCGGACGTCCTGGGCTCAGCTAAAGgatgGGCCGCCACGGTGACCTTTAACCCCCGCGCTCGGGCGCAGTTCGAGGGGTTCCGCCGGCGCCAGGACAGCTTCAGCCTGGGGGTGTGTAACGGCTGTCAGCTCATGGCACTGCTGGGCTGGGTGGGGGTGGAGACTGAGGACGGCGCCTGTGAAGGTCCCGGTGTGGTTCTGAATCATAACAAATCGGGCCGGTTTGAGTCCCGGTTCGTCAGCCTGGCGATCTTGCCCTCACCCGCTCTCATGCTGCGGGGCATGGAGGGCTCCACGCTGGGAGTGTGGGTGGCACACGGAGAGGgcctgATGCAGTTCCGATCTCCGTCAGTCCTGCAGCGCCTGCTCTCCGGGTCCCTGGCTCCCCTGCGCTACGTAGACGACGCCGGCTCCCCCACGGAGCGGTACCCCCTGAACCCCAACGGCTCCCCGCAGGGTCTGGCCGGGCTGTGCTCTGCGGACGGGCGTCACCTGGCCATGATGCCGCACCCGGAGCGGGCGGTGCTGTCTTGGCAGTGGCCCTGGGCCCCGGCGTCCTTCGGGGCAGCCCTGACGCCCTCGCCCTGGCTCACCATGTTCCAGAATGCTGCTGCCTGGTGCCTGGCCAATCAGTGAGCAGAACAACGAGAACTAACATTCATGGAGTGACTGTAGCTGAGGCAAGGACAGCCACCCAGTCACAGCAGCGCAGGAGAGAAATTGCACCACCGGTGAGTGTTGTTCCATCCGGGGGCCGGGGCTGTGCAGACGTCTGTTTCACAGCATCTCTCTGCTCCGGCACCGGCCCACGCTCGGCCCGGGAGTCGCAATTCCTCTTTCCCGAGTCAGTTTTTTAAGCTCTGTGTTTCACTGCCTTATGGGACTGGTCTTCAGTGTCTTAAGTGTTTTTGGGTGGTTTGGCTGGTGACAATAGGTAAAGCTGTAACACTCAAAGCTCATCGTTTCATCCTATGGGGCTATTTGTATGGAAACAGCAATAAAGTGTTATTATAGACCTGCA

Function

GO:

id name namespace
GO:0006189 'de novo' IMP biosynthetic process biological_process
GO:0004642 phosphoribosylformylglycinamidine synthase activity molecular_function

KEGG:

id description
K01952 PFAS, purL; phosphoribosylformylglycinamidine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202283 lncRNA downstream 189953 16975448 ~ 16975879 (-) True G160682
TU202234 lncRNA downstream 310875 16854653 ~ 16854957 (-) True G160640
TU202225 lncRNA downstream 348637 16816939 ~ 16817195 (-) True G160631
TU202128 lncRNA downstream 850269 16315327 ~ 16315563 (-) True G160548
TU202118 lncRNA downstream 930029 16234415 ~ 16235803 (-) True G160538
TU202404 lncRNA upstream 225595 17408211 ~ 17408617 (-) True G160783
TU202475 lncRNA upstream 419465 17602081 ~ 17604562 (-) True G160842
TU202538 lncRNA upstream 625402 17808018 ~ 17810015 (-) False AMCG00001865
TU202551 lncRNA upstream 683400 17866016 ~ 17866221 (-) True G160903
TU202577 lncRNA upstream 732802 17915418 ~ 17915691 (-) True G160928
AMCG00001844 mRNA downstream 10966 17153503 ~ 17154866 (-) True AMCG00001844
AMCG00001843 mRNA downstream 73283 17091353 ~ 17092549 (-) True AMCG00001843
AMCG00001834 mRNA downstream 111788 17043718 ~ 17054044 (-) True AMCG00001834
AMCG00001835 mRNA downstream 123838 17022848 ~ 17041994 (-) True AMCG00001835
AMCG00001833 mRNA downstream 144994 17011476 ~ 17020838 (-) True AMCG00001833
AMCG00001845 mRNA upstream 33794 17216410 ~ 17233305 (-) True AMCG00001845
AMCG00001855 mRNA upstream 391044 17573660 ~ 17580861 (-) True AMCG00001855
AMCG00001857 mRNA upstream 400841 17583457 ~ 17584485 (-) True AMCG00001857
AMCG00001865 mRNA upstream 625429 17808045 ~ 17810097 (-) True AMCG00001865
AMCG00001863 mRNA upstream 677550 17860166 ~ 17865379 (-) True AMCG00001863
TU202328 other downstream 73383 17091418 ~ 17092449 (-) False AMCG00001843
TU201878 other downstream 1463332 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 1645193 15504311 ~ 15520639 (-) True G160255
TU201755 other downstream 1664064 15499553 ~ 15501768 (-) False AMCG00001771
TU202450 other upstream 348250 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 677523 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 726138 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1653166 18835782 ~ 18850884 (-) True G161153

Expression Profile