RNA id: TU202328


Basic Information

Item Value
RNA id TU202328
length 483
RNA type TUCP
GC content 0.51
exon number 4
gene id AMCG00001843
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17091353 ~ 17092549 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGCTGTTTGGCGCGGTCTGGGCTGCAGTCGGGCGGCTGTTCCTGCATTTCTGATAATAAAGTAAAAGCGTAAAGTAGCCGCTcaccctccacacacacagggtgCCATGTCCGGGGCTCGGCCCAGTCGCGGTGCTGCAGTGGGCCAGGCTGACGGCCAGCTGgaagagctgcaggaggagctgcaggCTTTGCGGCAGATGCGCTGCTCTCTGCGCGCAGTTGAGCACATGGCGGTTTGCTTGAACCAGAACATCCAGCTGGCCATTAAAAACCGGGATAGAGTTGCAGaattaaataaagGCTGGCAGATTTTCTTCTCGGGGCAGAAATGATTGATGGGCAGAACAGGACGACTGACACCAGCTGTGCGggatttttcattatttttcatcatgTCAAAGAGTGCAAAACTTATTTTCTAGTTTAACTGTGCAATTGTTTGTAAGAACGTGAATAATACCACTCCTAATAATGCcaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202283 lncRNA downstream 115539 16975448 ~ 16975879 (-) True G160682
TU202234 lncRNA downstream 236461 16854653 ~ 16854957 (-) True G160640
TU202225 lncRNA downstream 274223 16816939 ~ 16817195 (-) True G160631
TU202128 lncRNA downstream 775855 16315327 ~ 16315563 (-) True G160548
TU202118 lncRNA downstream 855615 16234415 ~ 16235803 (-) True G160538
TU202404 lncRNA upstream 315762 17408211 ~ 17408617 (-) True G160783
TU202475 lncRNA upstream 509632 17602081 ~ 17604562 (-) True G160842
TU202538 lncRNA upstream 715569 17808018 ~ 17810015 (-) False AMCG00001865
TU202551 lncRNA upstream 773567 17866016 ~ 17866221 (-) True G160903
TU202577 lncRNA upstream 822969 17915418 ~ 17915691 (-) True G160928
AMCG00001834 mRNA downstream 37374 17043718 ~ 17054044 (-) True AMCG00001834
AMCG00001835 mRNA downstream 49424 17022848 ~ 17041994 (-) True AMCG00001835
AMCG00001833 mRNA downstream 70580 17011476 ~ 17020838 (-) True AMCG00001833
AMCG00001832 mRNA downstream 100440 16977323 ~ 16990978 (-) True AMCG00001832
AMCG00001821 mRNA downstream 122802 16960465 ~ 16968616 (-) True AMCG00001821
AMCG00001844 mRNA upstream 61054 17153503 ~ 17154866 (-) True AMCG00001844
AMCG00001842 mRNA upstream 73383 17165832 ~ 17182616 (-) True AMCG00001842
AMCG00001845 mRNA upstream 123961 17216410 ~ 17233305 (-) True AMCG00001845
AMCG00001855 mRNA upstream 481211 17573660 ~ 17580861 (-) True AMCG00001855
AMCG00001857 mRNA upstream 491008 17583457 ~ 17584485 (-) True AMCG00001857
TU201878 other downstream 1388918 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 1570779 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 1589650 15499553 ~ 15501768 (-) True AMCG00001771
TU201755 other downstream 1589650 15499553 ~ 15501768 (-) False AMCG00001771
TU201754 other downstream 1589650 15500363 ~ 15501768 (-) False AMCG00001771
TU202450 other upstream 438417 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 767690 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 816305 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1743333 18835782 ~ 18850884 (-) True G161153

Expression Profile