RNA id: AMCG00001853



Basic Information


Item Value
RNA id AMCG00001853
length 306
RNA type mRNA
GC content 0.68
exon number 4
gene id AMCG00001853
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17527741 ~ 17531215 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTCCTCCAGGGAACGAGTCTCTGCTGAATTTGTCTTCTGCCGGGAGTGCAAGGCTTCGTACCACGATGGCGACTGCAGCGCCGCCCTGCTGCCGGGGCCGAGAGACGCGGTGATGCAGGGCTTCGTCACCGACGAGGAGGCAGCGCGACAGGCGAGCTGGGAGCGGGCGACCCGGGAGACCATCCAGAACACAACCCGGCCCTGTCCCCGCTGCCGGGCCCCCGCTCGGTGCCGGTTCGAGTGGTGCTGGCTGTGCGGCGTGGAGTGGAACCGGGAGTGCATGGGCGACCACTGGTTCGGATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202403 lncRNA upstream 119125 17408257 ~ 17408616 (+) True G160782
TU202349 lncRNA upstream 345140 17179717 ~ 17182601 (+) False AMCG00001841
TU202248 lncRNA upstream 617708 16905249 ~ 16910033 (+) True G160649
TU202247 lncRNA upstream 625301 16899895 ~ 16902440 (+) True G160648
TU202122 lncRNA upstream 1249687 16276806 ~ 16278054 (+) True G160542
TU202511 lncRNA downstream 266984 17798199 ~ 17804178 (+) True G160869
TU202542 lncRNA downstream 328947 17860162 ~ 17861427 (+) True G160895
TU202559 lncRNA downstream 385580 17916795 ~ 17917054 (+) True G160910
TU202592 lncRNA downstream 492981 18024196 ~ 18029816 (+) True G160939
TU202597 lncRNA downstream 507489 18038704 ~ 18039374 (+) True G160943
AMCG00001856 mRNA upstream 7213 17518704 ~ 17520528 (+) True AMCG00001856
AMCG00001846 mRNA upstream 80899 17445932 ~ 17446842 (+) False AMCG00001846
AMCG00001841 mRNA upstream 345966 17179594 ~ 17181775 (+) True AMCG00001841
AMCG00001840 mRNA upstream 348328 17177215 ~ 17179413 (+) True AMCG00001840
AMCG00001838 mRNA upstream 366950 17144241 ~ 17160791 (+) True AMCG00001838
AMCG00001854 mRNA downstream 1236 17532451 ~ 17543361 (+) True AMCG00001854
AMCG00001852 mRNA downstream 12537 17543752 ~ 17568195 (+) True AMCG00001852
AMCG00001847 mRNA downstream 64118 17595333 ~ 17601349 (+) True AMCG00001847
AMCG00001851 mRNA downstream 139324 17670539 ~ 17670922 (+) True AMCG00001851
AMCG00001849 mRNA downstream 139851 17671066 ~ 17672381 (+) True AMCG00001849
TU202413 other upstream 64807 17417351 ~ 17462934 (+) True AMCG00001846
TU202141 other upstream 1155437 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 1232235 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 2088710 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 2193174 15331620 ~ 15334567 (+) False AMCG00001760
TU202633 other downstream 656687 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 685360 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1139067 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 1368122 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile