RNA id: TU202549


Basic Information

Item Value
RNA id TU202549
length 1513
RNA type TUCP
GC content 0.51
exon number 4
gene id AMCG00001863
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17860139 ~ 17865379 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGTCCGTCCTTTTGCCACTCGGTTGCCGGTGGAAGTGTGCGGTGCACAGCTAGTCACCTATTTACCGGAcaataaaagtgtaaaatgtattacaaattcaGCGGATTTACACAGAGACTGACGGGATCGGCGCCGACGACCGCCTACAGCCCCCAGGGACTGAGACCGGGCGTCCCCGCTGAGCCCCCGACCATGATCTTCGCCACCCCGACCAAAGTGGTGTCCCAGGCGGGAGAGGCTGCCCAGTATTTAGGCATCAACAAAGTGCCCGACTTGCAGAGGCTGTTTCAGATATCCGACGGCGTGCCAGTGCACCTGAAGCGGGGCGTCCCAGACAAGCTGCTGTACCGGACCACCATGGCGCTGACGATCGGGGGGACGCTGTACTGCCTGGTCGCGCTCTACATGGCCGCCCAGCCGCGCAAAAAGTGAACCCAGCCTCCCGGCACCTGCCCCTCACcttgtgttaataataataaatagatataattattataagatTAAAACGATGACTTTGTAAAGGAAATGCTGTCAACCTGGACGACCTCAATTCAGTGCTCAGCCCTGGCTGTTAtttacacccccacccccactcagCGATTCGGCTTTCTCACGGCTTTCCCCAGTTTCATTTCAATAAGGAATCTTTCCCAAGGCCTTTGGTCACCTCTCCGTGGTCGCACACTCATAACTACATAATCTCTCACTTCTGTGGATCTCGATTGTCTGCATGtacagtaatgtgtgtgtgtgtgtgtgtgtgtttgaaagggggtgtctaaggaaaataaatcacatgatGGTTCTAACCAGCCCTGAATTGTGCAGGGCATGAGGTCCGATAGTGTGACTACATTGTCTACAGACTTTCTCTCGTCTTTGCCGGGTAACGCACAGATGATCACTTTGAGTAGAGGTGGGTTTCTCCTGTGGGTTCTTGGCACTGTCTGCCGGTGCCAGTCTGTGTTTGGGGGCCAACGCGCAGCGGGTCGTGTGTTTGAAGGGACCGCTTGTACAACAAACGCCAAAGGAAACAGAGTCTGATGCTTCACCGCTTGTGTTCAGTCGTTCTGATGTTAGGAGTGCTTTTCAATCTGTGAATGCTTAAGGACCATTAAGAGTGACATTCAGAAAGTTAGACTACCAGCATCTTGTGTGGGCGCAGCTTCAGTGAGATACAGAAGTTGCCGTCCTGCTTTCCTGCTCTTGTAACGCCTCAAACGACTCGCCTGTGAGCTTCGCAGAGGCCGCTCTCCGCATGTCCAAATCAGTGTGCTGTTACTCAGCTTTGTGATTTAAATAGGACTCTGTAAATCGCCGCCACTGATTCTTCACAACAGTCGAACGCCACTCGTACTGTGAAAGGTTCAACCGGCTGATCTGGGTTTCTAGGGAACAGACGGGTGTGGAGCTATACTGCGACCAGAGCGCAGCAGGGGTCTTGTAATTATtcttggggaaaataaatgtattttatttgtaaaagctccgttgtttgtgtttttgtttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202538 lncRNA downstream 50124 17808018 ~ 17810015 (-) False AMCG00001865
TU202475 lncRNA downstream 255577 17602081 ~ 17604562 (-) True G160842
TU202404 lncRNA downstream 451522 17408211 ~ 17408617 (-) True G160783
TU202283 lncRNA downstream 884260 16975448 ~ 16975879 (-) True G160682
TU202234 lncRNA downstream 1005182 16854653 ~ 16854957 (-) True G160640
TU202551 lncRNA upstream 698 17866016 ~ 17866221 (-) True G160903
TU202577 lncRNA upstream 50100 17915418 ~ 17915691 (-) True G160928
TU202598 lncRNA upstream 173386 18038704 ~ 18039374 (-) True G160944
TU202707 lncRNA upstream 396926 18262244 ~ 18346022 (-) True G161030
TU202718 lncRNA upstream 435766 18301084 ~ 18304098 (-) True G161039
AMCG00001865 mRNA downstream 50042 17808045 ~ 17810097 (-) True AMCG00001865
AMCG00001857 mRNA downstream 275654 17583457 ~ 17584485 (-) True AMCG00001857
AMCG00001855 mRNA downstream 279278 17573660 ~ 17580861 (-) True AMCG00001855
AMCG00001845 mRNA downstream 626834 17216410 ~ 17233305 (-) True AMCG00001845
AMCG00001842 mRNA downstream 677523 17165832 ~ 17182616 (-) True AMCG00001842
AMCG00001864 mRNA upstream 8225 17873543 ~ 17879017 (-) True AMCG00001864
AMCG00001869 mRNA upstream 64800 17930118 ~ 17936656 (-) True AMCG00001869
AMCG00001867 mRNA upstream 73595 17938913 ~ 17946511 (-) True AMCG00001867
AMCG00001871 mRNA upstream 263396 18128714 ~ 18130167 (-) True AMCG00001871
AMCG00001870 mRNA upstream 269779 18135097 ~ 18187983 (-) True AMCG00001870
TU202450 other downstream 328149 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 767690 17091418 ~ 17092449 (-) False AMCG00001843
TU201878 other downstream 2157639 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 2339500 15504311 ~ 15520639 (-) True G160255
TU201755 other downstream 2358371 15499553 ~ 15501768 (-) False AMCG00001771
TU202574 other upstream 43436 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 970464 18835782 ~ 18850884 (-) True G161153

Expression Profile