RNA id: TU202538


Basic Information

Item Value
RNA id TU202538
length 537
lncRNA type sense_over
GC content 0.53
exon number 3
gene id AMCG00001865
representative False

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17808018 ~ 17810097 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAGGTCGCATTTCAGATAATTTTCGCCAGAACGTTCTGTACAAATTGTCGAACACATACTGTAGATGGGAAGAACATtcaacaaaagcacacaaaacacacgACTGCCCGCTCTGTCTTGGGTGtcactgtttgttttgggtGAACCTCAgggtgtgtgcgtctgtgtgtgtgggagtccACAGGGCTGTATATAAACTGTGCCAGCCCGTGTGAAGGGTAGATACTTTGAACTACACCAAGATGAAGGCTTTTCtggtcctgctgctgctgctgccgttGTGCACAGCTTTTACTATCGAGTGCTATGGGGAAGATTTCCTGATGGTACAGAACCAGCTGCTCCGGTGCTCCAGTCGAGTTCCCCAGGTCTGCTACACTAGAGAAACTGGGGAGAAAGGCTGCACTACGCTGGCCTTCTGCAAGCATCCCGGCTGGAAATGCTGTGATACCAACCGCTGCAATGCCTGAGCTGCCAACCCTGCCCAGCCTGGGACTCTCCCAGTGGGCAGCTGGGGGTACAGACACTGCTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202475 lncRNA downstream 203456 17602081 ~ 17604562 (-) True G160842
TU202404 lncRNA downstream 399401 17408211 ~ 17408617 (-) True G160783
TU202283 lncRNA downstream 832139 16975448 ~ 16975879 (-) True G160682
TU202234 lncRNA downstream 953061 16854653 ~ 16854957 (-) True G160640
TU202225 lncRNA downstream 990823 16816939 ~ 16817195 (-) True G160631
TU202551 lncRNA upstream 56001 17866016 ~ 17866221 (-) True G160903
TU202577 lncRNA upstream 105403 17915418 ~ 17915691 (-) True G160928
TU202598 lncRNA upstream 228689 18038704 ~ 18039374 (-) True G160944
TU202707 lncRNA upstream 452229 18262244 ~ 18346022 (-) True G161030
TU202718 lncRNA upstream 491069 18301084 ~ 18304098 (-) True G161039
AMCG00001857 mRNA downstream 223533 17583457 ~ 17584485 (-) True AMCG00001857
AMCG00001855 mRNA downstream 227157 17573660 ~ 17580861 (-) True AMCG00001855
AMCG00001845 mRNA downstream 574713 17216410 ~ 17233305 (-) True AMCG00001845
AMCG00001842 mRNA downstream 625402 17165832 ~ 17182616 (-) True AMCG00001842
AMCG00001844 mRNA downstream 653152 17153503 ~ 17154866 (-) True AMCG00001844
AMCG00001863 mRNA upstream 50151 17860166 ~ 17865379 (-) True AMCG00001863
AMCG00001864 mRNA upstream 63528 17873543 ~ 17879017 (-) True AMCG00001864
AMCG00001869 mRNA upstream 120103 17930118 ~ 17936656 (-) True AMCG00001869
AMCG00001867 mRNA upstream 128898 17938913 ~ 17946511 (-) True AMCG00001867
AMCG00001871 mRNA upstream 318699 18128714 ~ 18130167 (-) True AMCG00001871
TU202450 other downstream 276028 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 715569 17091418 ~ 17092449 (-) False AMCG00001843
TU201878 other downstream 2105518 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 2287379 15504311 ~ 15520639 (-) True G160255
TU201754 other downstream 2306250 15500363 ~ 15501768 (-) False AMCG00001771
TU202549 other upstream 50124 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 98739 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1025767 18835782 ~ 18850884 (-) True G161153

Expression Profile