RNA id: AMCG00001867


Basic Information

Item Value
RNA id AMCG00001867
length 4273
RNA type mRNA
GC content 0.46
exon number 10
gene id AMCG00001867
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17938913 ~ 17946511 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAAGGGAATTTAACTTTCACCCAAAAGCCAGCTGGCTCCTCCCTCGGTTTCCAATCTGCCATGAACTTTAGTTTCTCTATCGATCACTACATGAACCATCAGTGAAGGCTACGGAGAGCCAGCCAGGTTGTGTTTCAGGATTAatataataacacaattataaGGGGAAGGACTCTACAGGACCCCAGACATGGACACGGATGGCCTGCAGATCAATGTAGATCAATGGATTGACCAAAATGAAGCTGATTTCCTCCCACCGGTTTGCAACAAACTCATGCACTTTTCCCAGCTGAACATCATGTTTGTCGGAGGTCCGAACACCAGGAAGGACTATCACATTGAGGAGGGCGAGGAGCAAAACATGTCCAACTCTACCCCTGTCCTGCAGCTGTTCTTCCAGCTCCGCGGGGACATGTGTCTGAAGGTGATCGAGCACGGGAAGCACAAGGACGTGCACATCCGAGAGGGGGAGatGTTCCTGCTGCCCGCGCGCATCCCTCACTCCCCGCAGAGGCAGGCCAACACAGTGGGGCTGGTGGTGGAGAGGAGGAGGCTGAAGACCGAGACGGACGGCCTGAGGTACTACGTTGAGGGCACCACGGACGTGCTGTTCGAGAGGTGGTTCTACTGTGAAAACCTGGGGACCCAGCTGGTGCCGGTGATTCAGGAgtTCTTCAATTCCGAGCAGCAACGGACGGGCAAACCCAAACCAGAGGAGCTGCTGAAACGGCCGCCGTTCCCCATGAACACCACCCACGTGATGGTGCCGTTCTCGCTCCGGGACTGGATCGACAAGAACCGCCAGGCCGTGGCCAAGGGTCGCGCGCTGGACATGTTTGGGGCTCAGTTTGAGACTGAGACGGTTCTGTACGGGTCAGGAGAGAGCAATGGATGCAGGAGCAACGTGGACACGTGGATTTGGCAACTGgagggAACGTCTCAGGTGACCCTGAACGGCCAGGCGTTGTCTCTGTCACGTGGGGACAGTCTGCTCATCCCGGGACAGAGCGAGTACAGCTGGAAAAGAGCCAGCGATAGCATAGCCCTGTATGTGGTGCAAGATCCCGAGAGGAAGAGACCGCACTGAGTCCACAGACAGCAACCGAAGCACCACGGCAGCATTGCAATCCAGCATTTGGAGTTCATTTGCAGACCTCAGTCCTGGCTTGATTTGCAGTAGTGTGTGAATTCTTTTTTCGTGTCTCTTACTACTGTGAAAATTGCTGCTGGCAAAGGTTTAAGCTTCGCCGAGTGAAGAGTCATCTGCTCTTAACAGataatttttatttgatttactgGTAACTCTAATCTATAATGTAGGTACAAACATGGTCTGACATTCGGACACAATTATCAAGGTAAATCAAAGGATGTGTGGTCAAAATCTATCTTTGAAAGATAATTTAAACAACAGATTATATCCTGTTTCAGCTCTGAGAATATGGCTGTTGTTTAAGTGAAGTTGGGAgaattgtataattttaaatatatccttaaatgttttgtagctgtagatttatatataaaggttATGAAACACTAGTAGAAGCTCATTGACCTTTTACCACTTTAGATGAGATGTATGCCAATTTGTCATATTCTCTGTATCTATGCAATATTGTACAATAATAAGATAAACTGATAATATATAGAAGAATAACTAATTGAATTGGTTGCACAATAAGTTATTGAAAGAGATCTAAGATTAACACATCTAGTAAACTTTGAGGCTTTGAGAAAACGTGTAAAAGTAGATGCATTTTaactgagatttgttttgtgaaataaagtaaTGTTGTGTACCCTATTGTCAGGCGTATTTCTTATATAAACCCTTTACATCACAACCTGTTCCATTAAGTCATCAGGAAGCTTTAGTGCAGCATCACTTGCTTCCCTTGTAAGTGACGTGTGTTTAAGAttttcaagaaataaaacagaaacacttgTTCAGGCGCAGTATTTAATATCAGTTAAGTTTCGTGaaaggtttaaaatattttgtttgtaaatatatagaGATGAAACGCAAAAAACTTCCATGATCTACTTactctgtctatatatatgtgtgtgtgtgtgtgtgtgtactcgtatttaattttgaaaaggtaacattttaaattaaccatGAAACAGGAGATAAAGCATTTCCTTTTCTATATGTGGTTTTTGTAGGACATTtggcaacaaaacaaacccagaaGATGACGGTTACTTTGAAActtccatttccttttcaaGTAAACGTGCAGAGATCTCATGgtgatacatacatatttttgtaaccAAACCACAATGGCGTGCAACTTCTTAACCTGCAGAAAAGCCCAGGGATTATTTGATCAACCACTTGTATCTTGTTCATGCCAGACAAGGGGTCAGGAGAGCCTACAATGCTCTCCTGACCCCAAGGTTGGGCAGGTTGTCCAGCCGGAGCTGCAGGGTACTCCTGATGATGAGTTGCTCGGCCACGATGGACGCCAGGAACCAGAGGGGCGCGTACTCCAGCGTCACCAACCCCATGAAGTTCCCCCGGAAGGCAGAGTAGTCCCACGGGCAGGCACCGAACAGGCGCAGGAGGGAGCCGGTGCCGAACTCCCACGCGTACGTCCACAGGGTGTAGAGAAGCGCCCGGGCCAGGAGGGGGCAGCAAGAGCGCAGATGCAGGTACATCTTCTCCATGACCAAAATCGATGTGCCGTAGATGAGAAGCGCCCAGACGCTGCTGTGCCCCGAGAGCTGCCGGGCACGCGTGTGGGCGAAGTCCCAGGCGGCCGTGAAAGTCACCTCGCACAGGTAGCCGTGGAGGGCGTAGAGGTACCAGCGCGTCGACGCACCCAGCGGCCTGTATGCCCTCCGCTGCGCCGTCTGAACGCAGCCTCTCTGCACACGGCGGGCTGTGGGAACCAACGAGAAGCGGTCAACGAGTGGGAAGAGGAACAAAGGCCGGTGAGGTTTTACTCTGGAACCAGATCAGCGTGAGCACAGCGATTGCGTTCACCCTCACACCGCAACGCCCAGAGCAGTGTGTTTTACTGTCTGAAGTCACTGGGCCACAACGCCAAAATCACTTGGCGTGATATTACTGCATGCTCTTGCAGACACTCAACTCAACAAACTACACTTTATCAcgtttaccacagtacaccacactgcATTTCCTGTTCCCTTAGGACACTTTCAAGCTGCCTTCTAACACAGCTTGTGTGTTGCCTATTTggctgtatttgcatgttataGAGGGGTCATGGTGTACAAACAGTCTAATTACTCTTGGCgctatttccattgtatgatcaataataataataatacttacagTAACTTACATACTATCATGAACATACCTGCGATTACACTACATCTACTCACATACTTACTTTTACACACTATTACTGATGCATGCTACTCCTATCCTCAATTATAAAACAAGGTATTTTAGAGCACGACAGCATAAAGTTCATAGTCATGTATTTCTTTCCTCTCCGATGTGTCTTTGAAGTTTCTGTATGTGTCAGCCCATACAGTGTGATTTAGCAGACATGACGGAGTAAAGTGTTGCTTCCTGTCTGAGTCATTTAGATGAACTGACACGCCACAGTTCGTAGGATCTTTAGGAGCTGGTTTTCAATAGAAATCACACAGGAAGGTGGTTTTGGACATCCCGGATGTTTCACTCCGCTCTCAGCCCTTCCGACACACCTGTGCGCAGTTTTAATCGATCTCCGTGAATTTGGTACCACAatgagaattattattattagaataatTATAGCCTTGCACAGTTACCTGCAGCAAGAAACATCCCACTCTTCATCACTGACTGACCATCTGTTTTTACAAGAGTGAAGTCAAGCCAGCCTGGGGAAAACTGGCCAAATGctgttaaaattacataaaattgcTGTTCTGGTGTCTTCCTAAGAGACAGGTGCCCTTGGCAAGCCAGTTTAGTGACCCTGGTAGGCATGTTTTGTTGTGAATGCTTTCAGAGCATCCTATACTGCTGCTCAACACGTCCAGTCGAGGTCAATGTTTCAATGACTAAACCAGTGGTTCCCCACCCTGGTTCTCTCAAGCctaagctctcaattacttaattgaacccttaacttaaataatgatttgcttacattgtattttctaaattgtGTAATTGATACCAAGTTGTTTCCATAGTAAGATAAGTTACTGATACAAATACTTAAAagccctactgtttaaaattagtattagtttaattaagggttcaattaagtaactgag

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0000334 3-hydroxyanthranilate 3,4-dioxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K00452 HAAO; 3-hydroxyanthranilate 3,4-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202577 lncRNA downstream 23222 17915418 ~ 17915691 (-) True G160928
TU202551 lncRNA downstream 72692 17866016 ~ 17866221 (-) True G160903
TU202538 lncRNA downstream 128898 17808018 ~ 17810015 (-) False AMCG00001865
TU202475 lncRNA downstream 334351 17602081 ~ 17604562 (-) True G160842
TU202404 lncRNA downstream 530296 17408211 ~ 17408617 (-) True G160783
TU202598 lncRNA upstream 92193 18038704 ~ 18039374 (-) True G160944
TU202707 lncRNA upstream 315733 18262244 ~ 18346022 (-) True G161030
TU202718 lncRNA upstream 354573 18301084 ~ 18304098 (-) True G161039
TU202859 lncRNA upstream 896465 18842976 ~ 18850884 (-) False G161153
TU202869 lncRNA upstream 939783 18886294 ~ 18887568 (-) True G161161
AMCG00001869 mRNA downstream 2257 17930118 ~ 17936656 (-) True AMCG00001869
AMCG00001864 mRNA downstream 59896 17873543 ~ 17879017 (-) True AMCG00001864
AMCG00001863 mRNA downstream 73534 17860166 ~ 17865379 (-) True AMCG00001863
AMCG00001865 mRNA downstream 128816 17808045 ~ 17810097 (-) True AMCG00001865
AMCG00001857 mRNA downstream 354428 17583457 ~ 17584485 (-) True AMCG00001857
AMCG00001871 mRNA upstream 182203 18128714 ~ 18130167 (-) True AMCG00001871
AMCG00001870 mRNA upstream 188586 18135097 ~ 18187983 (-) True AMCG00001870
AMCG00001885 mRNA upstream 270435 18216946 ~ 18223752 (-) True AMCG00001885
AMCG00001884 mRNA upstream 285519 18232030 ~ 18278892 (-) True AMCG00001884
AMCG00001876 mRNA upstream 411522 18358033 ~ 18363257 (-) True AMCG00001876
TU202574 other downstream 28060 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 73595 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 406923 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 846464 17091418 ~ 17092449 (-) False AMCG00001843
TU201878 other downstream 2236413 15693674 ~ 15702500 (-) False AMCG00001784
TU202858 other upstream 889271 18835782 ~ 18850884 (-) True G161153

Expression Profile