RNA id: TU202803



Basic Information


Item Value
RNA id TU202803
length 486
RNA type TUCP
GC content 0.62
exon number 3
gene id AMCG00001880
representative False

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18663995 ~ 18673815 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


GTTTTCAGTCCCctgaatgcacacacacatataaaactgTCTTAACCGTCTCTTCTGTCCCGCAGCACGACGTGTCTCAGGTCCTGCTGAAGGCCGCGCTGGCCGGCGTGGTGGAGGAGTGCGTGAGCTTTGTGGGGGTGGATATCAACATCTGCTCCGAGACCCTGATGAGGCACGTGGCGGGACTCAACGCCAGCCGGGCGAAGAGCATCGTGGAGTGGCGTGAGAAGAACGGGCCCTTCGTGAACCGGGAGCATCTGAAGCAGGTCAAAGGCCTCGGACCCAAGAGCTTCCAGCAGTGCGCCGGCTTCATCCGCGTCAACCCGGAGAACGTGCGGAGCGCGGCCAGCAGTGATCAGGGCGCTGTGGCAGAGGAGCCGGCGGCTCAGAAACCAGCCAATAAGAAGAGCAGGGGCAAAGCGGCTGGCGGCGGCACACCACAGCTCAACCCCCTGGACCAGACCTGCATCCACCCCGAGTCGTACG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202644 lncRNA upstream 451251 18218764 ~ 18219031 (+) True G160985
TU202597 lncRNA upstream 630908 18038704 ~ 18039374 (+) True G160943
TU202592 lncRNA upstream 640466 18024196 ~ 18029816 (+) True G160939
TU202559 lncRNA upstream 753228 17916795 ~ 17917054 (+) True G160910
TU202542 lncRNA upstream 808855 17860162 ~ 17861427 (+) True G160895
TU202880 lncRNA downstream 251028 18923449 ~ 18923672 (+) True G161170
TU203031 lncRNA downstream 782667 19455088 ~ 19457752 (+) True G161282
TU203034 lncRNA downstream 835822 19508243 ~ 19508522 (+) True G161285
TU203158 lncRNA downstream 1563756 20236177 ~ 20236391 (+) True G161392
TU203242 lncRNA downstream 1802250 20474671 ~ 20474889 (+) True G161469
AMCG00001877 mRNA upstream 130485 18536853 ~ 18539797 (+) True AMCG00001877
AMCG00001874 mRNA upstream 303046 18364302 ~ 18367236 (+) True AMCG00001874
AMCG00001873 mRNA upstream 311327 18347796 ~ 18358955 (+) True AMCG00001873
AMCG00001872 mRNA upstream 329405 18328491 ~ 18340877 (+) True AMCG00001872
AMCG00001875 mRNA upstream 375592 18287712 ~ 18294690 (+) True AMCG00001875
AMCG00001888 mRNA downstream 54278 18726699 ~ 18727082 (+) True AMCG00001888
AMCG00001886 mRNA downstream 98659 18771080 ~ 18778684 (+) True AMCG00001886
AMCG00001897 mRNA downstream 117345 18789766 ~ 18803912 (+) True AMCG00001897
AMCG00001895 mRNA downstream 157758 18830179 ~ 18850985 (+) True AMCG00001895
AMCG00001898 mRNA downstream 197415 18869836 ~ 18877697 (+) True AMCG00001898
TU202641 other upstream 453144 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 469427 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 1207348 17417351 ~ 17462934 (+) True AMCG00001846
TU202141 other upstream 2297978 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 2374776 16237262 ~ 16295506 (+) False AMCG00001814
TU202872 other downstream 226916 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile