RNA id: AMCG00001881


Basic Information

Item Value
RNA id AMCG00001881
length 5278
RNA type mRNA
GC content 0.61
exon number 29
gene id AMCG00001881
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18187902 ~ 18209391 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGGTGTTGTAACTGCAGAAAAAGGCTCTGAGGAGTGGTTAAGGTGcggtgatgctgcgCACGCGGTCCCGGCCATGGCCGAGGACGTGGGCTTCGAGGGACCGGTGGACTGGCGGGAGAGGTGCGTGACCCTGGAGAGCCAGCTGCTGAAGTTCAGGGTGCAGGCCAGCAAGATCCGGGAGCTGCTGGCCGAGAAGATGCAGCAGTTGGAGAGGCAGGTCCTAGACGCAGAGCGACGCGCGGAGAAAGCTCACCAGCAGGTGCAGGTGATGGAGGAGAAGCTGAAGGCGGCGGACGTCCAGACCAGCGAGGCAGAGAACCGGCTGTACCGCCGCTGCCAGGACCTGCAGACCCTGCTGCAGGAGAAGGATGACATCATAGTGATGCTGGAGCAACAGCTGGACGAGCAGAAGCAAATCCGACTGCAGGAGGCCAAGATCGTGGAGGAAAAGGCGACCAAGATCAAAGACTGGGTGACGCTGAAGCTGCGTGAGCTGGAGGTGGAGAATGAGGGCCTGCGCGCCAGCACTCAGAAGCAGAGCCAGCAGATCCAGGAGCTGCAAAGACAGGTTCAGGCCGCAGAGCAGAAGCAATCCAGCCCGGCACCACGGCCCGGAGAGGCCCAGCGTCTCAGCAGCCTGACCTTCGGCTGCTTCCAGGTCCGAGCCAAAAGTCCGCAGGTCCTGACTGGGCCGGAACCGGGCCGCCGGGCCGTCACCAGCAGGCAGGAGGGCGGGGTGTCCGAGGAGGGAACACGACCCGTGAATGGTGGAGCACAAGACTCTGTGTTTAAATCTGAGGACGTCGGCAGGACCCCCAGGTCTCTCCAGATGGCCGGGTCCGAGAGGGCAGATGGCGCCGGGCGTGGGGGCGAGGGCAcctcagaggaggaggaggcggaggcggGGGGCCGGGGCGGGGGGCCGTCGCGGCGCTTGTCCTCGGCGCTGTCCAGTGTGGCGTCCGAGGGAGACGGGCCGCGCTTCAGCCGGGCGGGCAGCGAGACCTACCTCACCGCCTCCGACGACAGCAGCTCCCTCTTCGACGACGACATGCAGCGCCTGGAGCGGCCCCACGAGGGGGAACGGGCCGCACCGGGGAGCGGGCGGCGGGGCAAGGCTGGCAGGGAGGGGGACAGCTCCTCGGACGAGCTCAACAAGCGCTTCCAGTCCCAGCGCCTCgactcgtcctcctcctccagcgAGACCAACACCCCCAGCCCCATCCTCACCCCCGCCCTCACTCCCAAACACCCCACACCCACCCTGGACCCCGGCACCCTCTCCCTGCCCCAGTCCCCCGACGGCGTCCACGCCAAGATGCCCCGGCCCAAGCTGCGGACCCCCAATGTGTTCAGCATCAGCGTGGCGCTGGCCCGGAAGCACCTCAGCCAGCCGCAGCTCAGCTCGGAGCATCCGTACGGCCGCACGCGCAACGCCATCAGCATGGTGCGCCCGCTGCGGCCCCAGGAGACCGACCTGGACCAGGAGCAGGACATGGAGGTGGGCTGCGACGAGGGCATCTTCTCCAACGACTCCTCGGAGGCCCCCACCAGTGGCGAGGAGCCCGAGATTTACGCCGTTGCCAAGTCCGGGATCAGACTGTCTGAGACGGTCTGCCCTGACCTTGCCAAGAAAAGCCCCGGGCCCATGGCGTCGTACTCAGCCTCGGCTTCGTACACCTCCCTGATCTACAAGAACATGACCACCCCAGTCTACACCACGCTGAAGGGGGGCAGCAGTCCCGGCAGCCCCCGTGCCCTCAAGAGAGGCGTGTCCCTGTCCTCGATGACCTCCGAGAGCGATTATGCCATCCCGCCCGATGCCTACTCCACCGACACCGAGTGCTCCGAGCCCGAGCAGAAGCTGCCCAAGACCTGCTCGTCCACCAGCGACAACGGAAAGAGCGAACCTTTGGAGAAGTCCGGGTATCTGCTGAAGATGGGCGGCAGAGTGAAGACCTGGAAGAGACGCTGGTTTGTGCTGAAGGGCGGGGAGCTGCTGTACTACAAGTCCCCAAGCGATGTGATCCGGAAGCCCCAGGGCCAGATCGAGCTCAGCACGTCCAGTAGTATCGTCCGCGGAGACGGGAAGCAGACAATCCAGCTCGTCACAGAGAAGCGGGTCTACTTCCTGACCGCCGACTCCCCGAATCTCCTGGAGGAGTGGATCAGGGTCCTGCAGAACGTCCTGCGGGTCCAGGCGGCCAGCCCCCTCTTCACATGCCCCGAGGTCCGGCCCAGGATGAAGGGCCTGCTGACCAAGGTGAAACACGGATACTCCAAGCGAGTGTGGTGCGCCCTCATCGGGAAGAGCCTCTACTACTTCCGCAGCCAGGAGGACAAGTTCCCCCTGGGGCAGATCCGGCTGTGGGAGGCCCGAGTGGAGGAGGTGGATCGCTCCTGTGACTCGGACGAGGACTACGAGGCCAGCGGCCGGAGCCTGCTGTCCACCCACTACACCATCGCGGTGCAGCCCAGGGAGCAGGGCCCCACCTACCTGCTCATCGGCTCTCGCTACGAGAAGGACGCCTGGCTCTACCACCTGTCCGTGGCCGCGGGCAGCATGGCGAGCGAGGTGGGCACGGAGTTCGAGCAGCTGGTGGGCAAACTGCTCAGCGCGGAGGGAGACCCGGGATCTCAGATATGGAGACACCCCGCCCTGTGCTTCAGCAAAGATGGCATCCCCTCGTCCCTCACCACCCTGCCCTCACAGGCGCTGCAGACCGAGGCCATCAAGCTCTTCAAGACCTGCCAGCTGTTCATCAACGTAGCGATTGACTCCCCGGCCATCGACTACCATGTGTCTCTGGCCCAGAGCGCCCTGCAGGTGTGTCTGACGCACCCGGAGCTGCAGAACGAGATCTACTGCCAGCTGGTGAAGCAGACCCAGAGGAGACAGCCGCCAGGCCAGGCCGGGCCTCTGCAGgGCTGGCAGTTCCTGGCTCTGTGTGTGGGCCTCTTCCTGCCCCAGCACCCGTTCCTCTGGTTCCTGCAGCGCCACCTGAAGCAGCACGGAGAGTCCAGGACGGAGATTGGCAAGTATGCCATCTACTGCCAGCGCAGCGTGGAGCGGACACAGCAGAGGGGCGAGCGCCAGGCCCGGCCGTCCCGCATGGAGATCCTGTCCATCCTGCTGAGGAACCCCTACCACCACTCACTGCCCTTCAGCGTGCCCGTGCACTTCCTCAACGGCACCTACCAGGTGGTGGGCTTCGACTCCTCGACCACGGTGGATGAGTTCCTGGGCCGACTCAACCAGAGCTCAGGGATGCGGAAGCCGGCCCAGTCGGGGTTCGCCCTGCACACCGACGACCCCGCCGGGAGGGACCTGGAGCACCACCTGCAGGGCGGCATCAAGGTCAGGTCTCGTCTCCCGCCGACGGGCAAGATGTCTCATGCCGAAAGATGCGATTGCTCTGACCAGCGTGTTAACTCCGCTGCCTTGGCCCTGGCCGATCTCCTCCCCTCTCAGATCTGTGACATCATTTCCAAATGGGAGCAGGCGTCCAAGGAGCAGCACCCCGGCAAGTCCGAGAGCGCCCGGACCGTGAGGCTCACCTACAAGAACAGactGTATTTCTCCCAGCAGGCTCGGGGAGAGACGGAGCGCGAGCGGCTGCTGCTGACCTACCAGGCCAACGAGGAGATCGTGGACGGGCATTTCCCGGTCAACAAGGAGCTGGCGCTGGAGATGGCGGCCCTGCTGGCACAGGTGGAGTTCGGGGACTTCGAGCGGCCGTTCTCCCCTGCCCCGAAACAGGGCTCGGCTCAGTCCAAGTCCAATCAGACGCTGAAGCAGGTCCTGGAGAGGTTCTACCCCAAGCACTACCGACAGGGCTGCACCGAAGACCAGCTCAGACAACTGCGGCAGCGCCTCTCGGGCAGGTGGGGGTCTCTGAGGGGCCGCAGCTCGTCCGACTGCGTCCGTATCTACCTGACCGTTGTGAGGAAGTGGCCTTTCTTCGGTGCCAAGCTGTTTGCAGCCAAGCCCGTCACCCCCTCACCCCTGCAGGACGCCCCCGTGTGGCTGGCAGTGCACGAGGACGGCATCAGTGTCCTGGAGTTCAGCTCCATGCGGCTCCTGGTCTCCTACGGCCACCACAACCTGATGACCTTCGGGGGCTGCCGGGATGACTTCATGCTGGTGGTTGGGCAGAGCATCGGGAACAGTCCCATCAAGGACAAGCCCACGGAGAAGCACCTCTTCGCGATGGCTAAACCCAAGATCCTGGAGATGACTCTGCTCATCGCCAGCTACATCAACAGCGTCCACCAGCAGAAAGCCGCCGCCCACCACCTCTCCGCCCCGGCGCTGCTCTCAGCTCCGCCCATGGGATTCAAGAGCAAGGAAGTGGGCGGCCGGCCCAGCAAGGGGCCCACTCTGCTGTGAACGCCCCCCACCGGCGGCTGTCTGGACCGCGGAGACGGGGtttcctcctccagctctcaGGGCCGTCCACCCGTGCTGCGGCTGTAGCAACCAAAGAGCACCGTTTACCCAGACCGTACCGCGCTAAACTTCGGCGTCACAAACCATTCAGAGTCCGAGGAGCCGTCTCTGCCCGAGCTGCCTCTAACGAGCTGCCCCTAACGAGCactggaaagcaatgcaaagtTCAAATGCAAAAACTTGAAGGTACATAGCTtccagattaaaaacaaatctattatttatttatgttaagcTTTCCATATAGCAGTTAAGGTCACAGACCCCCTAGTGGTTGTAAAGATGTGCTGCAAGCTCGGGGGCTCTGTGTTTGCTGTAATTCGTGAACCAGGAATGAACTAACTGGAAACTTAATCAATATTCTGCTTCGGCAGATAAGACAGGTTTTACTCTCAGTCTATCTTGTATCACTGCTGATACtcgtttttttaattgaaaactgcaCAGCTGTGTTGTTCTAAATTTCAGGACCCTgtcttggttttatttttgtgaccaTTCGGTCTCTGTTAGTCCCACTAAGAGTTGTGTATCCCTCCATTGTTATAACCATGCTGTGATATCTGTATTAACCTGTAAACACTCTGGTGTGTGTAATATACAtcgaaatatatacattataattgaGCTTTGTTATGTAGTCTGACTGcctgtattatgtatttcagaaaagacaaaacatatgTGAACGCAAAGACAACAGAGAAATATTAtctgcttaaatatttattttgataattgcCAGAATGCTTGGAAATTATAATTCTGATTCTCACAGaggtacagtatttaaatatttaataaaagcacttttatCTACCAA

Function

GO: NA

KEGG:

id description
K24020 PLEKHH; pleckstrin homology domain-containing family H

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202597 lncRNA upstream 154442 18038704 ~ 18039374 (+) True G160943
TU202592 lncRNA upstream 164000 18024196 ~ 18029816 (+) True G160939
TU202559 lncRNA upstream 276762 17916795 ~ 17917054 (+) True G160910
TU202542 lncRNA upstream 332389 17860162 ~ 17861427 (+) True G160895
TU202511 lncRNA upstream 389638 17798199 ~ 17804178 (+) True G160869
TU202644 lncRNA downstream 9373 18218764 ~ 18219031 (+) True G160985
TU202880 lncRNA downstream 714058 18923449 ~ 18923672 (+) True G161170
TU203031 lncRNA downstream 1245697 19455088 ~ 19457752 (+) True G161282
TU203034 lncRNA downstream 1298852 19508243 ~ 19508522 (+) True G161285
TU203158 lncRNA downstream 2026786 20236177 ~ 20236391 (+) True G161392
AMCG00001868 mRNA upstream 253026 17937744 ~ 17940790 (+) True AMCG00001868
AMCG00001866 mRNA upstream 262537 17885198 ~ 17931279 (+) True AMCG00001866
AMCG00001860 mRNA upstream 394463 17794741 ~ 17799353 (+) True AMCG00001860
AMCG00001861 mRNA upstream 405029 17787746 ~ 17788787 (+) True AMCG00001861
AMCG00001859 mRNA upstream 406918 17783849 ~ 17786898 (+) True AMCG00001859
AMCG00001883 mRNA downstream 618 18210009 ~ 18216623 (+) True AMCG00001883
AMCG00001882 mRNA downstream 14663 18224054 ~ 18230265 (+) True AMCG00001882
AMCG00001875 mRNA downstream 78321 18287712 ~ 18294690 (+) True AMCG00001875
AMCG00001872 mRNA downstream 119100 18328491 ~ 18340877 (+) True AMCG00001872
AMCG00001873 mRNA downstream 138405 18347796 ~ 18358955 (+) True AMCG00001873
TU202413 other upstream 730882 17417351 ~ 17462934 (+) True AMCG00001846
TU202141 other upstream 1821512 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 1898310 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 2754785 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 2859249 15331620 ~ 15334567 (+) False AMCG00001760
TU202641 other downstream 7184 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 460891 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 689946 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile