RNA id: AMCG00001886


Basic Information

Item Value
RNA id AMCG00001886
length 2022
RNA type mRNA
GC content 0.63
exon number 12
gene id AMCG00001886
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18771080 ~ 18778684 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTGCGCTCAGCTCCTGCGTGCCACAGCGTGCCGTGGGGGGAGTGGGCGTCCGCCGGCTGGTCAGCGCTGCTCGGCCCACAGGCGTCCAGATGGAGGCTGGCAGGCGCTGTAAACACAGACGCTCTGCAAACAGGAACTCCCCCTTCAGGGCCGGCTGTGCGGAGGAGGGCCGGGGACGCCAGTGCGGACGGGCTGCCGAGAACCCGTTTGAACCAGCAGAGCCCAGTGAAACGGATGCCTCGGCATCCAATGAAAATGAGGAGCGTGTGTTCAGGGAGCGGATGCGCCCCCGGAAGCGCCAGGGCGCCGTGCGCAGACGGGTCCACCAAGTCAATGGGCACAAGTTTATGGCCACCTACCTGCGGCAGCCCACCTACTGCTCCCACTGCAGGGACTTCATCTGGGGGGTAATAGGAAAGCAAGGCTACCAGTGTCAAGTCTGTACCTGTGTGGTGCACAAACGATGCCACGAGCTCATCATCACGAAGTGCGCCGGGCTGAAGAAGCAGGAGGCGACGCCGGATGAGTTCAGCATCCACAACTACAAGGTCCCCACGTTCTGTGACCACTGCGGCTCGCTGCTCTGGGGTCTCCTCCGGCAAGGGCTGCAGTGTAAAGTTTGCAAGATGAATGTACACAGACGCTGTGAAACCAACGTGGCCCCGAACTGCGGGGTGGACGCCCGCGGCATTGCCAAGGTGCTGTCGGACCTGGGCGTCACTCCGGACAAGATCACCAACAGCGGCCTGCGGAGGAAAAAGGCAAGTGGGCTGAACCACCGACCTGTGCAGCCCAAGACCCGCAACCTCAATCCAGGCGCAGACCCCCAGCAGTCCATCCCAGGGACCCCCCAGACAGAAGAGGACCGCTCCAAGTCTGCCCCCACCTCCCCCTGCGATCAGGAAATTAAAGAACTTGAAAACATCCGGAAGGCGCTGTCCTTCGACCACCGCGGCGAGGAGCACAAGAGCGCATCGTCCACCTCCTCGGACAGCCAGGGCCGGAGCTGTGAGGGCCGGGAGAACGGGGAGGTCAAGGGCGTACAGACCAAGAGGATGAGCCTGGAGGACTTTGTCTTCATCAAGGTCCTGGGCAAGGGCAGCTTTGGCAAGGTGGGCAGATACTCGGCACCGGGGTGGCGTGGGGTGGCGGTGTACCCTGGGCAGCCATATCACATCCCTGTTTTGTCCCAGGTGATGCTGGCGGAGCTGAAAGGTACGGACGAAGTGTACGCTGTGAAGGTCCTCAAGAAAGACGTCATCCTTCAGGACGATGATGTCGACTGCACGCTGACGGAGAAGAGGATCCTGGCGCTGGCCCGGAGGCACCCCTACCTGACCCAGCTCTTCTGCTGCTTCCAGACCAAGGTACTGCCCACCTGTGTGGCACGGGCTGGAGCTGCGCTGCCAGCAGCTGTAAACCACGAATCCATCACCGATAGGCAGCCATGTTTGAAGGCACCACCAGGTGGCAGCACAGCCATGGGGATGAAACACGCTTTCTTACGGGCAGCGCTGGGGGGTTGTCCGGCTCTGTTCTCCGCTCGGGGCTCTTTTGATCACCAGCCCAGCGTGAAGGGAGGCAGAAGGGCGGGGAGCAGGTGCGGTGCCGCCCGGCGCTGCCCTCAATGGGGATCAGTCAGCGCCGGCACAGAGCGGGCCGGGAGAGCGGGGGCGTCTGGGAGGGGAGAGACTGCTCAGTCCTCCAGCTTGAGATCAAATGATCATTTATCACGATATCAAACGCTGTGGTCGGGCGGAGAAGACCTGAAAGCGGCCCGGAGCGCTGTGGTCGACAGCTGGCACTGCGGCCGCTCGGTGGTCCGGGACGCGGCGATGGGACGAGATCTGGAAACAGGCGCGAGGGACAGAGGTCTGCGCAACCAACCgcttgtttattttactgcGCCGagagagggaggcaggacgagggaagggaagggggaCGGCTGGCGGGCGGGTGGGCGGACTGGTGCAAGGTTGCATTGTGAGCCGCCAGCCAAGATACCCGACTCATAG

Function

GO: NA

KEGG:

id description
K18050 PRKCE; novel protein kinase C epsilon type

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202644 lncRNA upstream 552049 18218764 ~ 18219031 (+) True G160985
TU202597 lncRNA upstream 731706 18038704 ~ 18039374 (+) True G160943
TU202592 lncRNA upstream 741264 18024196 ~ 18029816 (+) True G160939
TU202559 lncRNA upstream 854026 17916795 ~ 17917054 (+) True G160910
TU202542 lncRNA upstream 909653 17860162 ~ 17861427 (+) True G160895
TU202880 lncRNA downstream 144765 18923449 ~ 18923672 (+) True G161170
TU203031 lncRNA downstream 676404 19455088 ~ 19457752 (+) True G161282
TU203034 lncRNA downstream 729559 19508243 ~ 19508522 (+) True G161285
TU203158 lncRNA downstream 1457493 20236177 ~ 20236391 (+) True G161392
TU203242 lncRNA downstream 1695987 20474671 ~ 20474889 (+) True G161469
AMCG00001888 mRNA upstream 43998 18726699 ~ 18727082 (+) True AMCG00001888
AMCG00001880 mRNA upstream 97265 18663995 ~ 18673815 (+) True AMCG00001880
AMCG00001877 mRNA upstream 231283 18536853 ~ 18539797 (+) True AMCG00001877
AMCG00001874 mRNA upstream 403844 18364302 ~ 18367236 (+) True AMCG00001874
AMCG00001873 mRNA upstream 412125 18347796 ~ 18358955 (+) True AMCG00001873
AMCG00001897 mRNA downstream 11082 18789766 ~ 18803912 (+) True AMCG00001897
AMCG00001895 mRNA downstream 51495 18830179 ~ 18850985 (+) True AMCG00001895
AMCG00001898 mRNA downstream 91152 18869836 ~ 18877697 (+) True AMCG00001898
AMCG00001896 mRNA downstream 107876 18886560 ~ 18888592 (+) True AMCG00001896
AMCG00001889 mRNA downstream 121420 18900104 ~ 18901714 (+) False AMCG00001889
TU202803 other upstream 98659 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 553942 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 570225 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 1308146 17417351 ~ 17462934 (+) True AMCG00001846
TU202141 other upstream 2398776 16369413 ~ 16372304 (+) False AMCG00001814
TU202872 other downstream 120653 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile