RNA id: TU202872



Basic Information


Item Value
RNA id TU202872
length 995
RNA type TUCP
GC content 0.44
exon number 5
gene id AMCG00001889
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18899337 ~ 18901718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGTTGTCATAAGACTTcgtagatgttttatttattttgttgccttttcCGTTTgtagcttatttttattttcttgtttttctgtggtgGGTGAAACGATGGTTTGTGAGAAGTGTGAGAAGAAACTCGGGCGTGTCATCACTCCTGACACCTGGAAGGATGGAGCCCGAAACACTACAGAAAGCGGTGGGCGGAAGCTAAATGAAAACAAGGCACTGACTTCCAAAAAGGCGAGGTTTGATCCCTATGGAAAGTCGAGATTCGCCATCTGCAGGATTTGTAAGAGCTCGGTGCACCAGTCTGGCTCCAACTACTGCCAGGGCTGCGCGTACAAGAAAGGCATCTGCGCCATGTGTGGCAAGAAGGTCTTGGAAACCAAAAACTACAAGCAGACGTCCGTGTAGCTCCCGCACGGATGAGGGATTGGTAGAGCTGCCGGATCACGGGCCAAGCCGAGAGCCTTGGTTCGGCCGCTGCATGGTAGGATTTCCCCCGAAACTGTTGCCAGCCGCTCTGAAGTGACCCGGCTTTTGAgtcttttctattttattaagAGTGATTCCCCTGAACTGTTTTAAACCACGTGTTTACTACGGTAATATCTTTATGTTCTGTGCCGTTCTCTCCTGTAAATAGCTGTGCACAGATGCCGGCGGTCGAGTTGCTCTTTAATATGCAGGCATGGGCATGATGCACTatcagtgtgtggggggggtacTTTCACATCTTTGAgtgtaataattgtaatgcaATGTCAATTTCCTTTCTAATCCCCCCACAAGTCTGTATTTTAGTTCAATGTCATTGTTGAAATTGTAACACAATCCACAAGATTGTACACAGAGGTCTTTACTTATTGTAAATGTgctttattgaaattattagtGCTCATGGAAGCTGCCAATTTAAGAGACTGTTAATGTAGAAAGATTGTTTTGTCCATTTAATGTAAGTTatacatcattaaataaatctCCCAAATggtttttatattca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202644 lncRNA upstream 680306 18218764 ~ 18219031 (+) True G160985
TU202597 lncRNA upstream 859963 18038704 ~ 18039374 (+) True G160943
TU202592 lncRNA upstream 869521 18024196 ~ 18029816 (+) True G160939
TU202559 lncRNA upstream 982283 17916795 ~ 17917054 (+) True G160910
TU202542 lncRNA upstream 1037910 17860162 ~ 17861427 (+) True G160895
TU202880 lncRNA downstream 21731 18923449 ~ 18923672 (+) True G161170
TU203031 lncRNA downstream 553370 19455088 ~ 19457752 (+) True G161282
TU203034 lncRNA downstream 606525 19508243 ~ 19508522 (+) True G161285
TU203158 lncRNA downstream 1334459 20236177 ~ 20236391 (+) True G161392
TU203242 lncRNA downstream 1572953 20474671 ~ 20474889 (+) True G161469
AMCG00001896 mRNA upstream 10745 18886560 ~ 18888592 (+) True AMCG00001896
AMCG00001898 mRNA upstream 21640 18869836 ~ 18877697 (+) True AMCG00001898
AMCG00001895 mRNA upstream 48352 18830179 ~ 18850985 (+) True AMCG00001895
AMCG00001897 mRNA upstream 95425 18789766 ~ 18803912 (+) True AMCG00001897
AMCG00001886 mRNA upstream 120653 18771080 ~ 18778684 (+) True AMCG00001886
AMCG00001894 mRNA downstream 38052 18939770 ~ 18941440 (+) True AMCG00001894
AMCG00001890 mRNA downstream 71988 18973706 ~ 18974812 (+) True AMCG00001890
AMCG00001899 mRNA downstream 78752 18980470 ~ 19012030 (+) True AMCG00001899
AMCG00001900 mRNA downstream 140011 19041729 ~ 19047551 (+) True AMCG00001900
AMCG00001908 mRNA downstream 182800 19084518 ~ 19087852 (+) True AMCG00001908
TU202803 other upstream 226916 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 682199 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 698482 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 1436403 17417351 ~ 17462934 (+) True AMCG00001846
TU202141 other upstream 2527033 16369413 ~ 16372304 (+) False AMCG00001814

Expression Profile