RNA id: AMCG00001901


Basic Information

Item Value
RNA id AMCG00001901
length 7482
RNA type mRNA
GC content 0.65
exon number 25
gene id AMCG00001901
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19064520 ~ 19078157 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGGACAGTAACCGATCCGTGGCTCAGGGCCGGCGGCAGCGTCTGAACGGCAGGGGCTCCGGTCACCCGATACCCGCTCCTCTACAGAGAAGGGATCGTCTCGGGCACGGCGCTGAATCAGGGCCTCAAGCCTGCCTGAACATTTACAGTGTGACTCAATCCCAGTCTCGGGACGCGGCCTTCAGACTCCTGCTGTGGGCAACCTCTCTGGCGCTGACACTGGGCCGGCTGTGGGCAGCTGAGCTGAGTGCCTGCCTGGCTGCCGGGCAGCAGTGCCACAGCAATGCCGAGTGCATGAACACCATGGCGGGGGGTGTGCTGTGCGTGTGCCAGGTCGGCTACAACGGCAACGGGCTGCAGTGCACCGACATCGACGAGTGCTCCACCGGCATGGGGAACTGCCACAGCCAGGCCACCTGCATCAACACACCTGGCAGCTTCCGCTGCGTGTGCCGCCCCGGCTACACCGGCGACGGGGTGCGCTGCGAGGACGTGGACGAGTGCCAGACTGACAACGGAGGCTGTCACGTCAGCGCCCTGTGCACCAACCAGGCCGGGAGCAGGACTTGCGTGTGCCTGCCTGGCTTCACGGGCAACGGCCTCACCTGTGCCGACATCAACGAGTGCACACGCTCTGGGGTGTGCCACTGGAACGCTACCTGTGCCAACAGCCCCGGCTCCTACACCTGCACCTGCAACAGGGGCTACAAGGGCAACGGGAATTACCTCTGCCTGGACATCGACGAGTGCTCGGAGACGCCGGGCGTCTGCTCTCTGGCCTTCGGGTACAAGGGCTGCAGGAACCTGCCGGGCAGCTACACCTGCACATGTGACCAGGGCTACGAGAACAACGGCAGGACCTGCACCGACATCAACGAGTGTGCCAACAACCTCCCTGGCTACGCCTACAGAGGCTCGCTGTGCGAGGACATCAACGAATGCGCCCAGAACCGCTGCAGTCAGTTCGCCGCCTGCATCAACCTGCCAGGCTCCTTCACCTGCACATGCAACACCGGCTACAGAGGCAACGGCACGGCGTGCGAGGACATTGACGAGTGTGCGCTGAGCGCCAGGCTGTGTCACTCTGATGCCCTATGCACCAACCAGCCCGGCTCCTACACCTGCCACTGCCTCGGTGGCTATTCGGGCGACGGGGTCACACAGTGTCAGGACATAGACGAATGCGCCGTGCAAAATGGCGGCTGCCTTAACAACGCCAGCTGTATAAACACCAAGGGGTCCTTCTCCTGCCAGTGCGCCCGCGGCTTCCGGCTCATCAACAGCACCAATTGCCAAGACATTGACGAGTGCCAGGCAGACCCCGGGCCTTGCCAGCCCAACGAGCAGTGCGTCAACACGCTGGGCTCCTACACATGTCCCTGTGTGGTGGGCTTCTCCAAACCGAGGGGCGCCATCACCTGCACAGACATCAACGAGTGCCTCGGCGACCCGTGCCACCCCAACGCCACATGCCTCAACAGCTTCGGCTCCTTCAGCTGCTCCTGTAGAGCGGGCTTCACCGGGGACGGAGCCCTGTGCGAGGACGTGGACGAATGTAACCTACAGAGCGCCATCTGCCACCCCAGCACCCTGTGCTCCAATTTCGCCGGGGGCTTTTCTTGCCAGTGCTTGGAGGGCTTCGAGGGGGACGGGCATTCCTGCGAGGACGTGGATGAGTGCAGCTCGTCCAACCACACATGTCCTCCCAGCTCTGTGTGCGTCAATTCCGCCGGGTCGTACGTCTGTTCCTGTCTGAATGGCACCGTGGCCTACGATGCCATCTGCCAGCCCCCCAGCCTGAAATGCAGCCCCCCCTGCCACGCCAAAGGACTGTGCCATCCGGCCGCGGCCAGACACCAGTGCGTGTGCGACGTCGGGTTCGAAGGCGATGGACACAGCTGTGCCGATATAGACGAGTGCCAGGAGGACGTGTGCCTGGCCAACAAGACGAATTGTGTCAACTCGCCGGGGTCCTACTCCTGTGTCTGCAGGCCGGGATACATGGCCCTCGACGACTCGTGTGTCGACGTGGACGAGTGCGAGAGCGGGGAGCAGCGGTGCAGTGAGTTCGCGCAGTGCGTTAACATCGCGGGGAGCTACGCCTGCCAGTGCGCCAGTGGCTTCACGGGAGACGGCAGGAACTGCTCTGACATTGATGAATGCCAAAGCCAAAACGGAGGATGCCACCCGTCAGCAAACTGCACTAACACGGCCGGGGCCTTCCTGTGCACCTGCCCGCGCGGCACGGCAGGCTCCGGGTTCGAGTGCGCGGACATAGACGAGTGTGCCGACGGCTCCACTCACAGCTGCAGCACCCACGCCCTGTGCCTGAACTCAGAGGGGTCCTACGAGTGCCGATGTCGGGGGGGCTTTCAGGGCGACGGGTTGCTGTGTGAGGACGTGGACGAGTGCCAGTTGCCCTCCGCCTGTGCCAACGACACCGAGTGCAGCAACACGCTGGGCTCGTACCGGTGCTCCTGCCGCGAAGGCGTCTCCTACAGGGAGGGCATCTGCCTGGGACCGGACGGGTGCTGGAACGGCAGCTCCGTGTGCCACCTGCTGGCCAACTGCGAGGAGTGGCTGGGCTCGGCCTACTGCCGCTGCCGGCCTGGTGCAATGGGCAACGGGACACACTGCAGTGACCTCGATGAGTGTGCCACGGGCCTGGCGACGTGCCACCCCATGGCCGACTGTCTAAACGATGAGGGCTCATTCCACTGCGAATGCCGGGACGGCTACGAAGGCAACGGCATGCACTGCGCCGATGTGGACGAGTGCCAGGACACAGCGCTGTGCCCCGACAACAGCAGCTGTGCCAACACGGAGGGGGGCTACTCCTGCCAGTGCCACGCAGGCTTCACCGAGAATGGCTCCCAGTGTGAGGACGTGGACGAGTGCGCCGAGGACAGCCTGCTGTGCGCCAACGGCTCCTGCATCAACACGCCCGGGGCCTTCGTGTGTCTGTGCGACGACAGCTTCCAGAGCAACGGCACCCACTGCGTCGACACGGATGAGTGCGCTCTGAACGGCACGCGCTGCCCGGACTTCTCCAGCTGCCATAACACAGTCGGGGGGTTCCAGTGTCTCTGCAATGAGGGCTTCCTCCACAACGGGACGGACTGTGTCGACACGGATGAGTGCGCTCTGAACGCCACGCAATGCCCAGCCTTCTCCAGCTGCCATAACACAGTCGGGGGGTTCAAGTGTCTCTGCGACGAGGGCTTCCGTTTCAATGGCACCCACTGCGTCGACGCGGATGAGTGCACCCAGACCGGCACGCTCTGCCCGGCCTTCTCCAGCTGCCTTAACACCATGGGGGCGTTCAAGTGTCTCTGTGACGAGGGCTTCCGTCTCAACGGGACGGACTGTGTCGACGTGGACGAGTGCAACGACAGTGCCGGCGTGTGCCCACGGGAGGCGCTGTGCCTCAATTCCGTCGGCTCCTTCCGGTGCCAGTGCAGCAGCGGCTACCAGGCGGACGGGCAGGACTGCAGGGATGTGGACGAGTGTCTGAGCAACAGCAGCTGCCCTCTGGGACAGATCTGCGTCAACACCCTGGGCTCGTTCAACTGCTCTTGCCCGCCTGGGTTCCTGCCTGACGGCGCCACCTCCTGCCACGATGAAGACGAGTGCCTGAACGGAACCCAGCTCTGCCACCCCGTCGCCACATGCATGAACCAGCCCGGCTCGTACCACTGCCAGTGTCCTGGCGGCTACGCGGGGGACGGGGTGGACTGCAAGGACAAGGACGAGTGCTCTGTCCCCCGGCGTCCATGCCACCCGCAGGCCCAGTGCCTCAACACCCCCGGCTCCTACCTGTGCCAGTGCAGGTCCGGGTTCCTCGCCTTCGGGGGGGTCTGCTCGGACCTGGACGAGTGCCAGCGGGACAGGGGGGGGTGCCACGCTCAGGCCGTCTGCGTGAACACCGTGGGCAGCTTCTCCTGCCGGTGCCGGACGGGCTGGACGGGGGACGGGCGCACCTGCTCCGACATCGACGAGTGCAGGGCCCCCCTTGCCTGCCCTACACACGCCAGCTGCCACAACAGCCCCGGTGCCTACCGCTGCTCCTGCCCCGGCAACGGCACGGCCTGCCCGCCCACGGCCCCCGGGGACAATGGTGTCCTGCAGTTCCAGTCCCTCGATACCAACGAGCGCTACCTGTTCCCCAACCCCTATCCTGGCGGTTTCCAGGGGAAGGAGAGGACCCCCATGTTGGCGGTGTTCTGGGACGACGCAGACCTGACCGAGGGGGCGGGCGCGCTGTTCTACCAGGAGTACACACAGCCCAACGCCACAGACATCTATGCGCAGATTGTGTTCAGCCGGACGACAGTCGACGTGGGGCACTATATAGAGCACAGAGGCTGGCCGCCCTTCGTGCCCACCTGGATCCTGAAAGTCACCTGGGACCAGGTGCTGCCCGTGTCCTACCAGAGAGTCAACATGTCTGAGACCAACACCTTCCAGTGCATTCTGGCGACGGACGGCCTGCAGTCCTACGCCCTGCTGCGCTTTGGGGAGATGCGCTGGGGTCCCGGGCAGAGGCTGACGCACCGGGCACTCATGGGATACACCGACGGCAAGCAGCTGTTCCACAATGAGCTTCACTCCCAGCAGCAGGACGCGTTCGGGCCGGGGGGGCGCTACCGGCCGCAGCAGGTGCAGGGCAACACGGGGCAGCTGGGCCAGTGGGTGTATAAGCTGAGCGAGGAGCCCTCGGGGAAGGAGCCAGAGCCGCGCATGAGGTGCCAACTCTGGGCCCTCGAGGAGCTGCACGCCGCCAACTGGACTGACGGCCTGCCCTCCTGCCCCTGCCACCGGGCCCAGGCAGTGGAGGACCCCAGGTTCTCGCAGGAGCCGCCCCCCACCGTGCAGGCTGCCCTCGTGCAGGAGTTGCGCCAGCTGCAGACCCCCAGAGCCGCCGCGGTGTTCCACTCCCTCGTGCCCAGCGGCCAGGGCGCCGGGCGGAGCTGCGTGTACGACGCCCAGGGCCACCTGCTGGCTGGACTCAGTGAGCGCTACGCCTCCGCCACCAGCCTGCAGGACTACATTGGTACCGGGCCTTCTGGCATTTTACTTTCATTACACGGCAGATTGGTGGATGGGTTTAATCGAGATCTGCGCCCGTTCCTGTGGTGCTGCAATCAGTCTGCGCTCTGCCCGCTGTACTGGGCCAGGAGACCGCCGGACCGCTGCGAGAGATACACCCGCGGGGCCATCGGGCTGGTGTACGGCAGCCTGCACCTGCAGACCTTCGACGGGACGGAATATTCTTTCAAAGGGCGGGGCGAGTTCGTCATCGCCCGGCTGTCCTCCTCCAGCGGCTCCAACATCTTCACCCTGCAGGGACAGACGGCCGTGGTGGTGCTGGCCGAGGGACAGGCCTCCAGAGTGACCGCCATGGTGCGGCTGGCGGCTTTTCACCAGGGCATTGGCAAGGTGGACGGAGCAGCAGGTAGGACTGACACTGAGCGCCGGAGGGGCCGTGTGTTCTCTGTGCGGGGGCTGTTGGTGCGCTGCGGGGCCGTGCAGCAGTGCAGTGCGGTGTACCCGGGCGGGCTGTGCGTCACGGTGACCCGGGGCGGCGGGGGCTACCTGAACATGGCGCTGGAGGTGCCCCACGCCTTCTACTCCCGCACCGTGGGCCTGCTGGGGCTGTGGAGCTCCAGCCGCTCCGACGACTTCCTGCTGCCCAGCGGCGTCCAGGTGCCCTTTCGCCAGGGCAACCCGCCCTCCGCGAGGGAGCTGCACGACTTTGGGCTCTCCTGGTCAGTGCCCACTCCTGAGAGCCTCCTGCACTCGGCCCCGGCCTCAGACACCTTCCAGCCAATCACCATGACGGAGCTGCTGTCCGTCAGCCCTGAGCTTCTGAAGGAGGTGCAGGGGCGTTGCGAGGGGGTGGAGCAGTGCGTCCACGACTTTCTGGCCACGAACAGCACTGCCCTGGGCCTGCACACCGCGCAGTACTGGAACCGACACCAGCAGCTGGCCGTCATCCTCGGAAACATGCCCCCCCTGCCGACAGGCCCCACGCTGATCCAGTGCCGAGTGAACGTCACGGTCAAGGTGGTCTTCACGGCTCAGGACCCCAACAACGACTCCATCAGcttctccctgctctccccTCGACCGCCGGGGGCCACCATTGGGAATGCTGACGGAGTGCTGACCTGGACGCCCCTCGATGCCAAGCCGGTGTCGCTCACCGTGAGGATCAGTGACCAGCTGGCCGGCTCGCTGCTCACCCCCGTCATCCAGGTGTGCAGCTGCTTCAACGGAGGGACCTGCCAGTACCAAAGCGTCGCAGAGAGCCTCCAGCAGGGCAAATTCCAGGTGGTGGGCTGCCTGTGTCCTCCGGGCTTTGCCGGGCGGCTGTGCTCCGTGCCTATGGACGCCTGCAAGGGCCAGCCGTGCTTCCTAAACGTAACCTGCAGCAGCCAGCCCGCCCCCGAGCTCTTTTCCTGCGGGCAGTGCCCCCCCCGGACCGTCCACAAACACAAGGAGGGCTACAAGTGCTTTGAGAACGATGTCTGCCTGCCACCATCCCCGTTCCCCTGCCACCCGATGGCAGACTGCCACAGCACCGGCTACAACCACACCTGCCGCTGCAGAGCCGGCTTCACTGGAGACGGGCTCAACTGCACAGACATCAACGAGTGTCTGCACCCGTCTGCCTGCCCCAGCGCCAAGTTCGACTGCGTGAACACGGTGGGCTCCGTGCGCTGCTCCTGCCGGTACCGTGGTGCCCGGGACAATGACAGCTGCGGCGATTCGGAAAACCCCCCAGGGTGGAATGTCTTCAACTGCTCTCTCAGGTGGGCCCGGCTGCAGCCGCCGGCCGCGGACCGGACCCCAGAGCTGCGCGGCCTCCTGGCTCAGGGCTTCCAGAACAAGTTCTACAACGCCAGCTGGAAGGGCCCGGCAGCCGGCGGCTCCGCGGACGAGTACCGAGTCAACATGTCCAGTGACACGCCGCACTGGTACATCCGGGACTACCTCACTCGGGTCAGCCAGTTCTACGGCATCCAGCCCGAGAGCATCGCAGTGGGAGACGTAGACgagtgccaggccagggaggcAGCGTGCCCGGAGCCCACGCTGTGCACTAACACCTACGGCGGGCACCGGTGTGTCTGTGACGGGATGGCGGACATGGATTCCCACTCCTGCATTAAAGAGCAGGGTACTGAGAACGGGACCACCGCGCTGGAGGTGCCCTCTCCACGAGACCACCGCGCCCTGATCCTGGGGCTGGTGCTGGGCATCGGCGtcccactgctgctgctgctgctgctcctggtGGCCCTCGCCTGCTGCTTCTGCGCCTCGAGGAAGACGGCCAGAGAAGAGCCCCCCCCCGTGGCAGCAGACTACATCCCGGAGCAGTTCAACCCTCCACCATTTAACTACGCCGACCCGGCCCTGCTCTACAAAGTGCACTACAGCCCAAGGATGCTGGCCACGCAGCACCAGCACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202874 lncRNA downstream 162802 18899147 ~ 18901718 (-) True G161165
TU202869 lncRNA downstream 176952 18886294 ~ 18887568 (-) True G161161
TU202859 lncRNA downstream 213636 18842976 ~ 18850884 (-) False G161153
TU202707 lncRNA downstream 718498 18262244 ~ 18346022 (-) True G161030
TU202931 lncRNA upstream 5955 19084112 ~ 19084976 (-) True G161206
TU203051 lncRNA upstream 376967 19455124 ~ 19457742 (-) True G161302
TU203098 lncRNA upstream 1013956 20092113 ~ 20093345 (-) True G161346
TU203157 lncRNA upstream 1147500 20225657 ~ 20225919 (-) True G161391
TU203216 lncRNA upstream 1262268 20340425 ~ 20345341 (-) True AMCG00001945
AMCG00001905 mRNA downstream 9548 19054745 ~ 19054972 (-) True AMCG00001905
AMCG00001906 mRNA downstream 9895 19054329 ~ 19054625 (-) True AMCG00001906
AMCG00001904 mRNA downstream 10275 19053730 ~ 19054245 (-) True AMCG00001904
AMCG00001903 mRNA downstream 12209 19050302 ~ 19052311 (-) True AMCG00001903
AMCG00001902 mRNA downstream 21673 19040453 ~ 19042847 (-) True AMCG00001902
AMCG00001911 mRNA upstream 36606 19114763 ~ 19115644 (-) True AMCG00001911
AMCG00001912 mRNA upstream 49105 19127262 ~ 19131079 (-) True AMCG00001912
AMCG00001910 mRNA upstream 99108 19177265 ~ 19186120 (-) True AMCG00001910
AMCG00001914 mRNA upstream 209121 19287278 ~ 19299869 (-) True AMCG00001914
AMCG00001913 mRNA upstream 232881 19311038 ~ 19323661 (-) True AMCG00001913
TU202858 other downstream 213636 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 1153667 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 1199202 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 1532530 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 1972071 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile