RNA id: AMCG00001914


Basic Information

Item Value
RNA id AMCG00001914
length 2789
RNA type mRNA
GC content 0.62
exon number 11
gene id AMCG00001914
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19287278 ~ 19299869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agggagagacagagagagagagagagagagagagagagagagagagacggagagagggaggatgagCACAACTTTCTTTTATAAAGTAATCACAAGCCCTGGGTCAGGAGCTGGAGCACACTGGGTTCTGCAGTGACACTCATCTCAGTGCCCGGGGGGGGCTGCCAAAcggtttattttaatgtctatcCGGAAATTGTGTAACTTTGTGTTGCTGCTGTCGTTTCTTTTCGTTTGTGGCTGCAGCTGAATCACCACTCGTTATCGCATAAGGCGCAGAAGAGGGTGTATCTGCACTGTTTGGCAGCGAGCAGACAGACAGCTCTGCTGCACCCGAAACACGCTGCCCAGCTGGAGATGCTACAGTGACGGAGCAGAAACCCACTGGCCGCGCAGCTGCTCTCTCTCCGGGGGGCTCCCGCAGCTGCTCTTGCGCTCTCATCCCGCAGGAGATGCTCCGGCCAGGACCGGCCGCCGGCGTGGCTGTGCTCGCCCTGTGCGCCGCCCTGTGCGCCGCCCTGCAGGTGTGCGTCTCCGCGCTGCCCTTCACCTGCCCGGGCATCTGCCGCTGCGGCCGGGACTCGCTGAGCTGCACCCGGGCCACCCAGCTCGCCTCCACCGGGGACTTCTCCCACACCGCCAGCCTAAGACTAACCCATCTTCCGCTGCAAGAGATCCCCGGCAGGGCCTTCAGTGAGCTGATCAACATCTCCCGGATtgaaATCACACAGAGTGACTCGATCAAAACGATCCAAGGACAGGCGTTCATTTCCCTGCCCAGCCTTTCTGAGATCATGATACAGAACACAAAAAACCTGGTGGCTGTGGAGAAGGGGGCGTTCACCAACCTCACCAAGTTACGATACCTGAGCATCTGTAACACGGGGATCCGCGTGTTCCCCGACCTGACCACGATCGCCTCGCTGGAGTCCTACTTCTTCCTTGCAGTCGACCCCCACGGGGGCCCCTCTGTCCAGCTCacaagcctctctctctccagggagCTAGGGGACAACATGCACATCTCCACGGTGCCGGCCAACGCCTTCCTGGGGATGACGCAGGAGTATTCTCTCATgAACCTCTTTAAAAACGGATTTGAAGACATCCAGAGCCACGCGTTCAATGGGACTAAGGTGGATAAACTagTTCTGAAAGATAACAGATACCTGCGCAGGATCCACAGCGATGCCTTCAGTGGAGCCGAGGGACCCAGCATGCTGGACGTCTCCTCCACGGCGCTGCACTCGCTCCCGGCCCGGGGGCTGCAGGGGGTGCGGGTGCTGACGGCGCGCTCCGCCCACGCCCTGAAGACGCTCCCTCCCCTCGACAGCTTCCTGTCCCTGCAGGAGGCGCAGCTCACCTACCCCAGCCACTGCTGCGCCTTCACCAACTGGCACGCACACCGGGAAGACAGCTCCTTCCTGGGGGCGTTTGTGAACCTCACCAGGCCGTGCCCGAGCGACAAGAGGCAGGAGGACGCGTACCCTTCTGACAGCGGCCTGATGTATCCCGAGGACAGCAGCGATGTATACGACATCGATTTCCACTACCCTGACCTGGACCTGTGCGTCACCAACGTGCTCATCCGCTGCACCCCGGAGCCGGACGCCTTCAACCCCTGCGAGGATATCCTGGGCTTCGGCTTCCTGAGAGCCGCCATCTGGATCATCGCCCTGTTCGCCGTGGCCGGGAACGCATTggtgctgctggtgctgctgacCAGCCGCTACAAGCTCACGGTGCAGCGCTTCCTCATGTGCCACCTGGCCTTCGCCGACCTGTGCATGGGCGTCTACCTGCTGCTGATCGCCTGCATCGACTACCGCTCTCAGCACCAGTACTACAACCACGCCATCGACTGGCAGACGGGCGCCGGCTGTGGCGCGGCGGGCTTCCTCACCGTGTTCGCCAGCGAGCTGTCGGTCTACACACTCACCGCCGTCACGCTGGAGCGCTGGCACACCATCACCTACGCCATGCAGCTGGACCGCAAGCTGCGCCTGCGCCACGCCGCCGCCGTCATGGTGGGGGGCTGGGCCTCGGcgctgctgctggctgtgctgccCCTCTGCGGCGTGAGCAGCTACGCCAAGGTGAGCATGTGCCTGCCCATGGACATCGACTCGGCGCCGGCGCAGGGCTACGTCATCGCCCTGCTGCTCCTCAACGTGGTGGCCTTCACGGTCGTCTGCACCTGCTACGTGCGCATCTACCTGACCGTGCGCAACCCCGCGCTCTGCACCAAGCACAGCGACGCCACCATCGCCAAGCGCATGGCCGTGCTCATCTTCACCGACTTCCTGTGCATGGCGCCCATCTCCTTCTTCGCCATCTCGGCTGCGCTGAAGCTGCCCCTCATCACCGTCAGCCACTCCAAGATCCTGCTGGTGCTCTTCTACCCCATCAACTCCTGCGCCAACCCCTTCCTGTACGCCTTGTTCACCCGGGCCTTCCGCCGGGACGTGCTGAGCCGGTTAGGCTGCTGCCGGGCGCGCGCCGACCTCTACCGCACGCGCTGCCTCTCGGTGCGGAAGGTGCCGAACGCCAGCTCCCAGACAAGTGCCAACAAGAGCTCCCAGCCCATCCTCAGCCTGACGCCCTTCGcccacccctgcccccccgAGAAGAACCCGGACGGGCACTACTGCAAACCGCCCTTACGGACCATCTGAGCCGGGGATCGTGCCGGAGAACCGACGGTCGCTGAGCCCCTCGGATATCAGGGAATTTAAACATATGGAGATTCTTTtcatatgcaaaacaaacacacagacattttgcttttt

Function

GO: NA

KEGG:

id description
K04248 LHCGR; lutropin-choriogonadotropic hormone receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202931 lncRNA downstream 202302 19084112 ~ 19084976 (-) True G161206
TU202874 lncRNA downstream 385560 18899147 ~ 18901718 (-) True G161165
TU202869 lncRNA downstream 399710 18886294 ~ 18887568 (-) True G161161
TU202859 lncRNA downstream 436394 18842976 ~ 18850884 (-) False G161153
TU202718 lncRNA downstream 983180 18301084 ~ 18304098 (-) True G161039
TU203051 lncRNA upstream 155255 19455124 ~ 19457742 (-) True G161302
TU203098 lncRNA upstream 792244 20092113 ~ 20093345 (-) True G161346
TU203157 lncRNA upstream 925788 20225657 ~ 20225919 (-) True G161391
TU203216 lncRNA upstream 1040556 20340425 ~ 20345341 (-) True AMCG00001945
TU203248 lncRNA upstream 1138599 20438468 ~ 20438673 (-) True G161475
AMCG00001910 mRNA downstream 101158 19177265 ~ 19186120 (-) True AMCG00001910
AMCG00001912 mRNA downstream 156199 19127262 ~ 19131079 (-) True AMCG00001912
AMCG00001911 mRNA downstream 171634 19114763 ~ 19115644 (-) True AMCG00001911
AMCG00001901 mRNA downstream 209121 19064520 ~ 19078157 (-) True AMCG00001901
AMCG00001905 mRNA downstream 232306 19054745 ~ 19054972 (-) True AMCG00001905
AMCG00001913 mRNA upstream 11169 19311038 ~ 19323661 (-) True AMCG00001913
AMCG00001916 mRNA upstream 159411 19459280 ~ 19460843 (-) True AMCG00001916
AMCG00001917 mRNA upstream 208128 19507997 ~ 19511624 (-) True AMCG00001917
AMCG00001918 mRNA upstream 215712 19515581 ~ 19519632 (-) True AMCG00001918
AMCG00001919 mRNA upstream 272330 19572199 ~ 19573651 (-) True AMCG00001919
TU202858 other downstream 436394 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 1376425 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 1421960 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 1755288 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 2194829 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile