RNA id: AMCG00001917


Basic Information

Item Value
RNA id AMCG00001917
length 762
RNA type mRNA
GC content 0.59
exon number 3
gene id AMCG00001917
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19507997 ~ 19511624 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAAATCTCCTCCTCCGTCTCCCTGTGGTCCCCTTCCTTGCACAGGTGCCACGAGACGGAGGAAGAGGTTCAAGTCTCCGAGGGCAGGGAGGACCAAGACTTGTACTACACTCtcagaaacaatgatAACGAACGCCTGGCGATTGCTAGACAGCGAATCCCATATCGACTTGGTCGAGTAGTTGATGAATGGCTACTCGACAAAGGGCGGCAGCTCACTATCTTCAATAGCCAAACCACTATAAAAATCGGGGGGAAGGACAGGGGCCGCCCGTTCCAGGGCCAGCTCTCTGGCCTGTACTACAACGGGCTGAAGGTGCTCAACATGGCGGCCGAGAACGAACCCAACATCAAGATCGAGGGCAGCGTGCGGCTGGTGGGGGAGTCGCCGTCGTCCATGACCACCGAGTCCAGCGCCACAGCCAACCAGTCCGAGACGTCCACCTCCATCATGGAGATCACCACCACCACGGCATCCAGCCGGAGAGGGAAGCCGCCCACCCGAGAGCCACAGGTTCGCAGCTTTTCTGTCTTTCACAGTTGTGGGACGTTTTTAATGACTTCGCAATGGGGGTGCTGGTCTGATGGTGGAGAGCTCTGCAGACCTGGTCCAGAGAGATGGTTCAGCCTGGCTGAGGCTCCCCCGAGGGGCTCCTGGGAGCTGGGGAGAGTGCCACACCCCGGGGGCCAGTTGAGCGACCGGTCAATAGGGAGGTCCTGCAGAAGCACAGCAGTTGTCCAAGGCAGGGTCCATGTTTAG

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203051 lncRNA downstream 50255 19455124 ~ 19457742 (-) True G161302
TU202931 lncRNA downstream 423021 19084112 ~ 19084976 (-) True G161206
TU202874 lncRNA downstream 606279 18899147 ~ 18901718 (-) True G161165
TU202869 lncRNA downstream 620429 18886294 ~ 18887568 (-) True G161161
TU202859 lncRNA downstream 657113 18842976 ~ 18850884 (-) False G161153
TU203098 lncRNA upstream 580489 20092113 ~ 20093345 (-) True G161346
TU203157 lncRNA upstream 714033 20225657 ~ 20225919 (-) True G161391
TU203216 lncRNA upstream 828801 20340425 ~ 20345341 (-) True AMCG00001945
TU203248 lncRNA upstream 926844 20438468 ~ 20438673 (-) True G161475
TU203244 lncRNA upstream 964304 20475928 ~ 20478231 (-) True G161471
AMCG00001916 mRNA downstream 47154 19459280 ~ 19460843 (-) True AMCG00001916
AMCG00001913 mRNA downstream 184336 19311038 ~ 19323661 (-) True AMCG00001913
AMCG00001914 mRNA downstream 208128 19287278 ~ 19299869 (-) True AMCG00001914
AMCG00001910 mRNA downstream 321877 19177265 ~ 19186120 (-) True AMCG00001910
AMCG00001912 mRNA downstream 376918 19127262 ~ 19131079 (-) True AMCG00001912
AMCG00001918 mRNA upstream 3957 19515581 ~ 19519632 (-) True AMCG00001918
AMCG00001919 mRNA upstream 60575 19572199 ~ 19573651 (-) True AMCG00001919
AMCG00001927 mRNA upstream 109762 19621386 ~ 19634914 (-) True AMCG00001927
AMCG00001928 mRNA upstream 136128 19647752 ~ 19667440 (-) True AMCG00001928
AMCG00001929 mRNA upstream 164724 19676348 ~ 19677155 (-) True AMCG00001929
TU202858 other downstream 657113 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 1597144 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 1642679 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 1976007 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 2415548 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00009362 False 3069 mRNA 0.51 7 NC_007123.7 24561832 ~ 24636401 (+)
grasscarp (Ctenopharyngodon idella) CI01000063_04927483_04988999.mRNA True 1263 mRNA 0.55 7 CI01000063 4927483 ~ 4988999 (+)