RNA id: AMCG00001921


Basic Information

Item Value
RNA id AMCG00001921
length 1344
RNA type mRNA
GC content 0.66
exon number 10
gene id AMCG00001921
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19276693 ~ 19285887 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gggtcagggtcTCCGCGGCTGTAAATGTGGGACAGGAAGCGCGCCGCGGCTCTCGCCATGCTGTCCAACGCCAACCCGGTGCCCAAGCTGTACCGCTCCATCATCGAGGATGTGATCGAGGGGGTGAGGGAGCTGTTTGTGGATGAAGGTGTGGAGGAGCAGGTGCTGCAGGAGCTGAAGCAGATGTGGGAGTCCAAGGTCATGCAGTCCAAAGCCGTGGAGGGTTTTGCCAAAGACGCCGTAAACCCGTCCAACTTTGTGTTGCAGCTCCCGGCCAGCTACGCCCAGAACCTGCAGAAACCCACCGCCTCGATGGTCATTCCGGCCGGACAGAGCGTTCAGAGTTTCACCACCGACATGAACAGCTCCGGATCGGCGGCCACTCTGTCCCTCCCCCCCGGCATGTCCTACCCCGTGCAGATCCCGGCCGGAGTCACGCTGCAGACGTCCTCGGGGCACCTGTACAAGGTCAACGTCCCGGTCATGCGCCTGATCGAGCAGCGGGAGGCAGCAGTGCTGGGGGCCGGACCCAGGGGGCCCCAGGTGTCCGGTGTGTCCGTGCCGCGCGGCGTGCTGCAGCCCCTGACCCCGCAGAGGAAGGACCTGTTCCAGCCAGGGACCGCCGTCGGCCAactcctccagcagcagcagctggtcCTGGTGCCCCCCCGAGCGCCTCCCGTCCCCCAGCCTGTTGGCCAGCCCTCGCTCCAGCACACCACCCTGCTTGGTGACGGTCAGGTTGGGGCGGTGGCGCCTGAGTTCGGCCAGCCCGAGCCAAACCAAGCCCCGGCGGCGCAGAGCCAGACCTTCCCCGCCCAGCCGCCTCCCGGGCCCCCGGTAACCCCGACCCAGACCCTCGGCTCCGATCTGGTGCTCGGCGGCCTCACCCCCGATTTGGTGGCTGAGTTGGCATCAATATCCCCGGAGACGCCGGGACCGCTCGGGCCGGACCAGACGCCGGATTTGGACTTCGGTGACCTGGCTGACATCGTCCAGGTGGACGGCGCGTGCGACAGCTCCTCGGACGAGGACGGTGCCCTGAGGGAGGTGGCGGAGGCCGACTTCCTGGGCATCATCGACCCGGAGGACCTCAGGGTGCTGGAGGAGGGCGGCGGCAGCAGTGACTCCGACGGGTCCAGCAGCGCAAGCGACACGGAGCCTCTCCTGGAAGAGGTGGAGGACGATCCTTTAAACTCGGGGGACGATGTGAGTGAGCAGGACGTGCCCGACCTCTTCGACACGGACAATGTGATCGTATGTCAGTATGATAAGGACGGGGTGATGAGCTTCGGGGGGAAGGACTACGCTTTCTCCAAGGCCATCGGGGAGGCCGAGTGGTAG

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0006897 endocytosis biological_process
GO:0006367 transcription initiation from RNA polymerase II promoter biological_process
GO:0030131 clathrin adaptor complex cellular_component
GO:0005672 transcription factor TFIIA complex cellular_component

KEGG:

id description
K03122 TFIIA1, GTF2A1, TOA1; transcription initiation factor TFIIA large subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202880 lncRNA upstream 353021 18923449 ~ 18923672 (+) True G161170
TU202644 lncRNA upstream 1057662 18218764 ~ 18219031 (+) True G160985
TU202597 lncRNA upstream 1237319 18038704 ~ 18039374 (+) True G160943
TU202592 lncRNA upstream 1246877 18024196 ~ 18029816 (+) True G160939
TU202559 lncRNA upstream 1359639 17916795 ~ 17917054 (+) True G160910
TU203031 lncRNA downstream 169201 19455088 ~ 19457752 (+) True G161282
TU203034 lncRNA downstream 222356 19508243 ~ 19508522 (+) True G161285
TU203158 lncRNA downstream 950290 20236177 ~ 20236391 (+) True G161392
TU203242 lncRNA downstream 1188784 20474671 ~ 20474889 (+) True G161469
AMCG00001920 mRNA upstream 7034 19260178 ~ 19269659 (+) True AMCG00001920
AMCG00001924 mRNA upstream 21380 19254800 ~ 19255313 (+) True AMCG00001924
AMCG00001923 mRNA upstream 21999 19244816 ~ 19254694 (+) True AMCG00001923
AMCG00001922 mRNA upstream 38283 19231809 ~ 19238410 (+) True AMCG00001922
AMCG00001907 mRNA upstream 100844 19166236 ~ 19175849 (+) True AMCG00001907
AMCG00001915 mRNA downstream 156103 19441990 ~ 19442314 (+) True AMCG00001915
AMCG00001926 mRNA downstream 664565 19950452 ~ 19969912 (+) True AMCG00001926
AMCG00001937 mRNA downstream 795826 20081713 ~ 20087467 (+) True AMCG00001937
AMCG00001936 mRNA downstream 803750 20089637 ~ 20096591 (+) True AMCG00001936
AMCG00001935 mRNA downstream 848259 20134146 ~ 20167777 (+) True AMCG00001935
TU202872 other upstream 374975 18899337 ~ 18901718 (+) True AMCG00001889
TU202803 other upstream 604272 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 1059555 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 1075838 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 1813759 17417351 ~ 17462934 (+) True AMCG00001846

Expression Profile