RNA id: AMCG00001928


Basic Information

Item Value
RNA id AMCG00001928
length 1296
RNA type mRNA
GC content 0.62
exon number 4
gene id AMCG00001928
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 19647752 ~ 19667440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCGCCGCCACAAAGCGCCTGTACGCACCGCGGCCGGGAGACTATATTCGGGCTGACAGCTTGGCCCTTTGGCGGTCCGAGGCACAGGTGGGAAGGGAGAGGGAACGTGGTGACATGTTTGACGGGGGTGGAGCAGGTtgtgtataaaaacaatgatgtcaGGCTAGAATTGTCCCGCCTGGCCAAGCAGGGGGACCCCAAAATGAAGATTCATGGGGTGGTGGCGTTCAAATGCGAGAACGTGGCCACCTTGGACCCTATCACGTTCGAGACGCCCGACTCGTACATCACGCTGAACAAGTGGAACGCCAAGAAGACCGGCTCCATCTCCTTCGACTTCCGGACCACCGAGCCCAACGGGCTGCTGCTGTTCAGCCACGGGAAGCCCAAGCAGACGAAAGACGCCAAGAACCCCCAGACCATGAAGGTGGACTTCTTTGCCATCGAGATGCTGGATGGACACCTGTACCTCCTGCTAGACATGGGCTCGGGGACCACCAAGGCCAAGGCGGTGAACAAGAAGGTGAACGACGGGGAGTGGTACCATGTGGACTTCCAGAGGGACGGAAGATCAGGTACCATCTCCGTCAACACCATCCGCACGGCCTACACCGCCCCGGGCGAGAGCGAGATCCTGGACCTCGACGACAACCTGTACCTGGGCGGCCTGCCGGAGAACAAGGTGGGCCTGGTGTTCCCCACTGAGGTGTGGACGGCACTGCTCAACTACGGCTACGTGGGCTGCATCCGGGACCTGTTCATCGACGGCCAGAGCAAGGACATCCGCCGCATGGCTGAGGTGCAGAAGGCCGCCGGCGTCAAGCCCTCCTGCTCCAAGGAGGCGCCCAAGCAGTGCATCAGCAACCCCTGCCAGAACAGTGGCGTGTGCCGGGAGGGTTGGAACCGCTACGTGTGCGACTGCTCCGGCACTGGATACCTGGGCAGGTCCTGTGAGAGGGACGCCACGATCCTGAGCTACGACGGCAGCAAGTTCATGAAGATCCAGCTGCCCGTGGTGATGCACACGGAGGCTGAGGACGTGTCCCTGCGCTTCCGCTCCCAGCGGGCGTACGGCATCCTCATGGCCACCACGTCCCGGGACTCGGCTGACACCCTGCGGCTGGAGCTGGACGCCGGGCGGGTGCGGCTCACCGTGAACCTAGGTAACCCCACCCATCCCCCCCACGTCTCACCCACCCGCCATGGCATGACACACAGCCTCCCACTGACACGCCTTCATCTGATTGAGCCAGAGCAGCACAGGAGCCTCACATGCTgtccatgtttattttaa

Function

GO: NA

KEGG:

id description
K07377 NRXN; neurexin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203051 lncRNA downstream 190010 19455124 ~ 19457742 (-) True G161302
TU202931 lncRNA downstream 562776 19084112 ~ 19084976 (-) True G161206
TU202874 lncRNA downstream 746034 18899147 ~ 18901718 (-) True G161165
TU202869 lncRNA downstream 760184 18886294 ~ 18887568 (-) True G161161
TU202859 lncRNA downstream 796868 18842976 ~ 18850884 (-) False G161153
TU203098 lncRNA upstream 424673 20092113 ~ 20093345 (-) True G161346
TU203157 lncRNA upstream 558217 20225657 ~ 20225919 (-) True G161391
TU203216 lncRNA upstream 672985 20340425 ~ 20345341 (-) True AMCG00001945
TU203248 lncRNA upstream 771028 20438468 ~ 20438673 (-) True G161475
TU203244 lncRNA upstream 808488 20475928 ~ 20478231 (-) True G161471
AMCG00001927 mRNA downstream 12838 19621386 ~ 19634914 (-) True AMCG00001927
AMCG00001919 mRNA downstream 74101 19572199 ~ 19573651 (-) True AMCG00001919
AMCG00001918 mRNA downstream 128120 19515581 ~ 19519632 (-) True AMCG00001918
AMCG00001917 mRNA downstream 136128 19507997 ~ 19511624 (-) True AMCG00001917
AMCG00001916 mRNA downstream 186909 19459280 ~ 19460843 (-) True AMCG00001916
AMCG00001929 mRNA upstream 8908 19676348 ~ 19677155 (-) True AMCG00001929
AMCG00001925 mRNA upstream 104639 19772079 ~ 19772822 (-) True AMCG00001925
AMCG00001930 mRNA upstream 393439 20060879 ~ 20081368 (-) True AMCG00001930
AMCG00001939 mRNA upstream 430112 20097552 ~ 20099147 (-) True AMCG00001939
AMCG00001938 mRNA upstream 433854 20101294 ~ 20130994 (-) True AMCG00001938
TU202858 other downstream 796868 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 1736899 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 1782434 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 2115762 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 2555303 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile