RNA id: AMCG00001936


Basic Information

Item Value
RNA id AMCG00001936
length 1661
RNA type mRNA
GC content 0.64
exon number 14
gene id AMCG00001936
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20089637 ~ 20096591 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGTACCGCAACCAGCAGCGTACACCGGAAGCAGACGTGACGCACTTCCTGCGAGCCCGCCGTCCAATCAGCGGCCGCCAGCTCCGGACTGCGACACGGACGGGAGCAGGATCCGCGGATGTCGCTCTGTCACTCGGGCTGAGCGGCTCCTCATCGCTCCGGGAGAGACGCCACCAGTGTCCGAGATGCCCGACGACCGGGGCGCTGTACAGAGAGGACGACTTCCTGATCATGACCACGAGCGACCAGGAGCGATACAAGTGTGTCCTGCCGTCCCTGTCCGGCGGAGATGATGATGAAGACCGGGACTACAGCGGCCCGACCCCCGCCGCTTTGCTGGAGCCGCTCTTCAAACAGAGCAGCTGTTCGTACCGGCATGTGCGGCAGTACCACGAGGAGAAGGAGACGGGGCAGaaaataaacatccaGGAATACTACCTGGGAAACATGATGAAGAAAAGTGACCCGTCAGCCGCAGGAGCGGAAGAGGGGAGAGCTGAGGAAAGCGAGCCGGAGAAGAGAGATCCGGAGAAGGAGGTGCCCACCAAGAACGTGGAAGGCCAGCTGACGCCCTACTACCCGGTGGAGATGGGCAACGGGACGCCCTGCGTGCTGAAGCAGAGCCAGCCGCGCTCCAGCCGCGTCCTGTACGTGTGCCACCCTGAGGCCAAGCACGAGATCCTGTCCATCGCCGAGGTCACGACCTGCGAGTACGAGGTGGTGGTGCTGACGCCCCTGCTGTGCAGCCACCCCAAATACAGGTTCAAGTCGTCCCCGGTCAACGATATCTTCTGCCAGTCTCTGCAGGGCTCCCCCCTGCGGCCCCAGCGCCTGGCCCAGCTGGACAGCGAGCAGGAGGCGCTGCTCAAACCCCCGTTCGGCGCCAGCCAGGAGCGCGAGgaggagACGTCCCCCCTGCGCGAGGAGGTCTTCTCCTCCACCCACAAGCCCATCAGCGTGGGCGGGCAGACGCAGGTGGCTGTGGGCACGACCCACATCTCGCGGCTGACGGACGAGCAGCTCATCAAGGAGTTCCTCAGCGGCTCATACTGCCTGCACGGGGGCGTCGGCTGGTGGAAGTACGAGTTCTGTTACGGAAAGCACGTGCATCAGTACCACGAGGACAAGGAGTCTGGCAAGAGCATCGTCGTGGTGGGCAGCTGGGACCAGCAGGAGCACGTGGAGTGGGCCCGGAGGAACGTGGCGCGGTCCTACCAGCTGAGGGACGAGGGCCTGCAGAAAGTCAAGGTGGTCTCCCATTTCTACAGCCACGGGGACACGTGTGACCTGACGGGGAAGCCCAGACAAGTGATCGTGAAGCTGAAGTGCAAGGAGTCCGAGTCGCCCCACGCCGTCACCGTGTACATGCTGGAGCCGCAGACCTGCCAGTACATCCTGGGGGTGGAGTCGCCGGTCATCTGTAAGATCCTGGACACGGCCGACGAGAACGGGCTGCTGTCCGTCCCCAGCTGACCCGGGACCGGCCCGGGAGCCGAGCCGGCGCTCCGCAGCGTGGAGGCGGTTCTGTGGGAGAGGAGAGTCCCCCGCCTCAGGACAGCCGCAGCCCGGGGGCTCAGACcgcagctctgtgtgtgtatatataggagTGTAAATAAACTGCAGCGTTTTTATTGCTGAATAAACTTGGCTTGTTGACCGTG

Function

GO: NA

KEGG:

id description
K14008 ERLEC1, XTP3B; endoplasmic reticulum lectin 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203034 lncRNA upstream 581115 19508243 ~ 19508522 (+) True G161285
TU203031 lncRNA upstream 631885 19455088 ~ 19457752 (+) True G161282
TU202880 lncRNA upstream 1165965 18923449 ~ 18923672 (+) True G161170
TU202644 lncRNA upstream 1870606 18218764 ~ 18219031 (+) True G160985
TU202597 lncRNA upstream 2050263 18038704 ~ 18039374 (+) True G160943
TU203158 lncRNA downstream 139586 20236177 ~ 20236391 (+) True G161392
TU203242 lncRNA downstream 378080 20474671 ~ 20474889 (+) True G161469
AMCG00001937 mRNA upstream 2170 20081713 ~ 20087467 (+) True AMCG00001937
AMCG00001926 mRNA upstream 119725 19950452 ~ 19969912 (+) True AMCG00001926
AMCG00001915 mRNA upstream 647323 19441990 ~ 19442314 (+) True AMCG00001915
AMCG00001921 mRNA upstream 803750 19276693 ~ 19285887 (+) True AMCG00001921
AMCG00001920 mRNA upstream 819978 19260178 ~ 19269659 (+) True AMCG00001920
AMCG00001935 mRNA downstream 37555 20134146 ~ 20167777 (+) True AMCG00001935
AMCG00001932 mRNA downstream 105918 20202509 ~ 20223949 (+) True AMCG00001932
AMCG00001934 mRNA downstream 127733 20224324 ~ 20226763 (+) True AMCG00001934
AMCG00001931 mRNA downstream 154387 20250978 ~ 20262962 (+) True AMCG00001931
AMCG00001940 mRNA downstream 195711 20292302 ~ 20297316 (+) True AMCG00001940
TU202872 other upstream 1187919 18899337 ~ 18901718 (+) True AMCG00001889
TU202803 other upstream 1417216 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 1872499 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 1888782 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 2626703 17417351 ~ 17462934 (+) True AMCG00001846

Expression Profile