RNA id: AMCG00001941


Basic Information

Item Value
RNA id AMCG00001941
length 1215
RNA type mRNA
GC content 0.62
exon number 7
gene id AMCG00001941
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20332375 ~ 20340657 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCATGCGGGGAGGAGATGAGCGCCCGCGAGAGAACCCGGCCCCTGTGGACGCCCAGCCGGCACCCGCGGGGGAGGGTGGCGGGCGGAGGAGGCTGCTGCACTGCTGTCTGCACGTGTCGGCTGCCCAGGCCCGCAAGGCGCTGTGGGGCGTGGCCATGGTGCTGTGCGTCTGCTCGTCCTGGACCGGCTCCACCCAGCTGGCCAAGCTCACCTTCACGCAGTACGACGCGCCCTTCACCCTCACCTGGTTTGCCACAAACTGGAACTCTCTGTTCTTCCCCCTGTACTATGTCGGACACCTGTACAAGGCCCCCGAGAGACAGTCTCCCAAGCAGAGATACAGGGAATGCTGCAGGTTTTTTGGTGACGATGGGTTGACAGTGAAGGTGTTCTTCACCAAAGCCGCCCCCTTTGGACTCCTGTGGACGTTAACGAACTACCTGTACCTGCAAGCGCTGAGGAAGATAAACACCACGGACGTGTCGGCGCTGTTCTGCTGCAACAAGGCGTTCGTGTTCCTGCTCTCGTGGATCGTGCTCCGGGACCGGTTCATGGGTGTCAGGATTGTGGCGGCGATCCTGGCCATAGCGGGAATTGTAATGATGACCTACGCTGACGGCTTTCACAGCCACTCTGTGATCGGGATCGCGCTGGTTGTGGCTTCCGCCTCCACCTCCGCCCTCTATAAGGTGTTGTTCAAGCTCATCCTGGGCAGCGCCAAGTTTGGAGAAGCAGCCCTGTTTCTGACGATCCTCGGGGGAGCCAACTTCCTGTTCATCAGCTTCATCCCCGTCATCCTGTACTTCACCAAAGTGGAATACTTCAGCTCCCTGGACGCCCTGCCCTGGGGCTGTCTGTGCGGCGTGGCCATCCTGCTCCTCAcGTTCAACATCCTGGTGAACTTTGGCATTGCGATCACGTACCCGACTCTGATCTCTCTCGGGATAGTCCTGAGTGTCCCAGTCAATGCAGTGGTGGACCACTACACCAGTGACATCAGCTTCAACAGCGTGCGCGTCATCGCCGTGCTGATCATCTGCCTGGgcttcctgctgctgctgctgcccgaGGAGTGGGACCAGACCCTGCTGGCACTGCTGGCCCGACTGCGCCGGCGCCGCAAGGAGGAGCCGGCCGAGGCCGCGGAGGTTGGGGGTGGGCTGGGCTGGAGCCGCCGGGGCCGGACCTCCATGTCCACCTTCACCCACTGA

Function

GO: NA

KEGG:

id description
K15288 SLC35F3_4; solute carrier family 35, member F3/4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203158 lncRNA upstream 95984 20236177 ~ 20236391 (+) True G161392
TU203034 lncRNA upstream 823853 19508243 ~ 19508522 (+) True G161285
TU203031 lncRNA upstream 874623 19455088 ~ 19457752 (+) True G161282
TU202880 lncRNA upstream 1408703 18923449 ~ 18923672 (+) True G161170
TU202644 lncRNA upstream 2113344 18218764 ~ 18219031 (+) True G160985
TU203242 lncRNA downstream 134014 20474671 ~ 20474889 (+) True G161469
AMCG00001942 mRNA upstream 1489 20314621 ~ 20330886 (+) True AMCG00001942
AMCG00001944 mRNA upstream 26066 20304627 ~ 20306309 (+) True AMCG00001944
AMCG00001940 mRNA upstream 35059 20292302 ~ 20297316 (+) True AMCG00001940
AMCG00001931 mRNA upstream 69413 20250978 ~ 20262962 (+) True AMCG00001931
AMCG00001934 mRNA upstream 105612 20224324 ~ 20226763 (+) True AMCG00001934
AMCG00001946 mRNA downstream 134508 20475165 ~ 20481455 (+) True AMCG00001946
TU202872 other upstream 1430657 18899337 ~ 18901718 (+) True AMCG00001889
TU202803 other upstream 1659954 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 2115237 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 2131520 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 2869441 17417351 ~ 17462934 (+) True AMCG00001846

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00024270 False 1410 mRNA 0.54 7 NC_007128.7 44502707 ~ 44584811 (-)
grasscarp (Ctenopharyngodon idella) CI01000315_00708672_00717317.mRNA True 1242 mRNA 0.53 6 CI01000315 708602 ~ 717317 (-)