RNA id: AMCG00001942


Basic Information

Item Value
RNA id AMCG00001942
length 915
RNA type mRNA
GC content 0.62
exon number 8
gene id AMCG00001942
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20314621 ~ 20330886 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGTGGGCTCACTCCCCTGAGCGCAGAGAGCTCAATCTCATTCACTCTCCTGCACAGCGGCCCTCAGTCGTGTCCTGGCCACTGGCAGTAGCCTTCATCAAAGCTGACTTTGAGAAGCTGCTGAAAGTCATTCCTGGCCTGGAGGCTGCAGAGCTGCTTCGTGCGTCTGTCCTGAGAACCCACTCCGAAGCTTTCAGCGGTCTCATCGTGGTTTGGCTCCTCTACCACGATGACATCCGAGAGCAGTTTATTATCCCGAGTGCAGCACAGAGACGCGGCTCGGTGCTCAGTGGCACTGGGAGCGTCCACACACGCGTGTTCAGGCAGAGCCGCAGTGCTGTGGGGGGTCGGGGGGTCCCCGCTGTCCCCGCTGTCCGACAGCGCATCGCTCTCCCGGTGTCCCCCGAGTCCCCCCGGGGATGTAGGGGGTCGCTCAGCCGGCTGCCCTGGCAGggCATTGCGAGGCTGCTGCAGAGAGGGGCAACCGAGGGAGAGACGAGTGGAAAGGGGGAGAAGAAGCACAGCATCTGCTGCGACACCGGCTTCAGGGATGTAGTCGACCGGGCAGAGCTCCGCTTCACCGAGCTCGCCATGAAGAAACACTCCGCCCGGGTGGCGCCGCTGTCTGCCTGCAACAGCCCGGTGCTCACCTTGACCAAAGTGGAGGGACtgttcccccccaccctgctaGCGAGGAGGATGACCACATGGGCGGGTCACTCTGCTCTCTCCTCTGCCAGGGCCGAGAAACCCGAGGGCCGAGTGGTCGGCCACCCTGGAACTGGTACCCTTCACCAGCTCGCCCCAAAACACCTGAATATCCGAGAGAAGCAGAAATCCTCTCGGCGTGGGATGCTTACCTACGAGATGAGAGTGttgatgaaatTGCACCTCATGAACCTCTGGATGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203158 lncRNA upstream 78230 20236177 ~ 20236391 (+) True G161392
TU203034 lncRNA upstream 806099 19508243 ~ 19508522 (+) True G161285
TU203031 lncRNA upstream 856869 19455088 ~ 19457752 (+) True G161282
TU202880 lncRNA upstream 1390949 18923449 ~ 18923672 (+) True G161170
TU202644 lncRNA upstream 2095590 18218764 ~ 18219031 (+) True G160985
TU203242 lncRNA downstream 143785 20474671 ~ 20474889 (+) True G161469
AMCG00001944 mRNA upstream 8312 20304627 ~ 20306309 (+) True AMCG00001944
AMCG00001940 mRNA upstream 17305 20292302 ~ 20297316 (+) True AMCG00001940
AMCG00001931 mRNA upstream 51659 20250978 ~ 20262962 (+) True AMCG00001931
AMCG00001934 mRNA upstream 87858 20224324 ~ 20226763 (+) True AMCG00001934
AMCG00001932 mRNA upstream 90672 20202509 ~ 20223949 (+) True AMCG00001932
AMCG00001941 mRNA downstream 1489 20332375 ~ 20340657 (+) True AMCG00001941
AMCG00001946 mRNA downstream 144279 20475165 ~ 20481455 (+) True AMCG00001946
TU202872 other upstream 1412903 18899337 ~ 18901718 (+) True AMCG00001889
TU202803 other upstream 1642200 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 2097483 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 2113766 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 2851687 17417351 ~ 17462934 (+) True AMCG00001846

Expression Profile