RNA id: AMCG00001944



Basic Information


Item Value
RNA id AMCG00001944
length 435
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00001944
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20304627 ~ 20306309 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGAGTGCGTGGGAGACGCACCGTGGTCCTGCTGACTCCTGCAGCCGTCTTGCGGGAGCAGAAGAGCGGTGGGTCGGTCGTGCGGTATCATGTATGGAGCTGCTCACGGGGGATGTGTGGGACTGTGTCGGGACCCCCCGCCGGGACTGCCGGCGCTACCTGGCGCCTTCAACCCTGAAGCCCGTCGGGATGCGCAGGTCTCCGGACGTCAGCCCCCGAAGGCTGTCCGACATCAGCCCCCAGTTGCGCCAACTCAAGTACCTGGTGGTGGACGAGTCGATCAAAGAGGACCTGAAGTCGTCTCGGTCAGTGGAGGACATCAACAGCGCCTCCATCGGGCTGACGTCCATCGAGGAGCGCATCCTGCGGATCACCGGCTACTACGGATACCAGCCCTGGAGCGCCATCTACAACAGTAAGACCCCGATTCATTAG

Function


GO:

id name namespace
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU203158 lncRNA upstream 68236 20236177 ~ 20236391 (+) True G161392
TU203034 lncRNA upstream 796105 19508243 ~ 19508522 (+) True G161285
TU203031 lncRNA upstream 846875 19455088 ~ 19457752 (+) True G161282
TU202880 lncRNA upstream 1380955 18923449 ~ 18923672 (+) True G161170
TU202644 lncRNA upstream 2085596 18218764 ~ 18219031 (+) True G160985
TU203242 lncRNA downstream 168362 20474671 ~ 20474889 (+) True G161469
AMCG00001940 mRNA upstream 7311 20292302 ~ 20297316 (+) True AMCG00001940
AMCG00001931 mRNA upstream 41665 20250978 ~ 20262962 (+) True AMCG00001931
AMCG00001934 mRNA upstream 77864 20224324 ~ 20226763 (+) True AMCG00001934
AMCG00001932 mRNA upstream 80678 20202509 ~ 20223949 (+) True AMCG00001932
AMCG00001935 mRNA upstream 136850 20134146 ~ 20167777 (+) True AMCG00001935
AMCG00001942 mRNA downstream 8312 20314621 ~ 20330886 (+) True AMCG00001942
AMCG00001941 mRNA downstream 26066 20332375 ~ 20340657 (+) True AMCG00001941
AMCG00001946 mRNA downstream 168856 20475165 ~ 20481455 (+) True AMCG00001946
TU202872 other upstream 1402909 18899337 ~ 18901718 (+) True AMCG00001889
TU202803 other upstream 1632206 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 2087489 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 2103772 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 2841693 17417351 ~ 17462934 (+) True AMCG00001846

Expression Profile