RNA id: AMCG00001946


Basic Information

Item Value
RNA id AMCG00001946
length 2028
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00001946
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20475165 ~ 20481455 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTACCCGACCGAGGAAGCCGAGGTGGAGGTGAGTCCCGGCCGCCTCGCTGTGCTGAAGCGGGTTGCGGGGGAAACGGTGGCTCTGAGGGCCGGAGACGGCGGCGTATGGCCGCAGCGTGTGAGGGATGCTGTTCATGCGGATTGTCCTTGTTCATGTTTTTGCTTCCATTGGCAGTACGATCCCTACACCTACACTACAAATGACTACGACCTACACACTGGTGACCCTAAAGCAGACCTGGCCTATGAACGCCAGTATGAGCAGCAGACGTACCATGTCATCCCAGAAGTGATCAAGAACTTCCTGCAGTACTTTCACAAGACAATTTCTGACCTCATTGATCAGAAGGTGTATGAGTTGCAAGCCAACCGAGTGTCCAGTGACAACATTGAACAGAAAATCTATGAGATTCAGGATGTCTATGAGAACAGCTGGAACAAACTGACTGATAGGTTTTTCAAGACTTCCCCGTGGCCTGAAGCTGAAGCCATCGCTTCCCTGGTTGGAAATGATGCAGTGTTCTTGATTCTGTATAAAGAGCTGTACTACAGACACATCTATGCGAAAGTCAGCGGGGGGCCGACTCTGGACCAGAGGTTTGAGTCATATTACAATTACTGCAATCTCTTCAACTACATTCTGAATGCAGATGGGCCTGCCCCTCTGGAGCTTCCTAACCAGTGGCTGTGGGACATCATAGATGAATTCATCTACCAGTTCCAGTCCTTCAGTCAGTACCGCTGTAAGACGGCCAAGAAATCCGAGGAGGAGATTGAGTTTCTGAGGAACAACCCAAAGATCTGGAACGTGCACAGTGTGCTCAACGTCCTGCACTCCCTGGTGGACAAGAGCAACATTAACGGACAGCTGGAGGTTTACACCAGCGGGGGAGACCCTGAGAGTGTGGCTGGGGAGTATGGCAGGCACTCGCTCTATAAAATGCTGGGATACTTCAGTCTGGTGGGTCTTCTGCGACTGCACTCTCTGCTGGGAGATTATTACCAGGCTATCAAAGTGCTGGAGAACATTGAACTGAACAAAAAGAGCATGTACTCGCGTGTGCCGGAGTGTCAGATCACCACCTATTACTACGTGGGTTTTGCCTACCTGATGATGCGGCGCTACCAAGATGCCATCCGAGTGTTCGCCAACATCCTGCTCTACATACAGAGGACCAGAAACATGTTTCAGAGATCCACGTATAAATACGAGATGATTAATAAGCAGAACGAACAGATGCACGGCCTGTTGGCCATCGCTCTCACGATGTATCCCATGAGGATTGACGAGAGCATTCACACGCAGCTGAGAGAGAAATATGGGGACAAAATGCTGCGCATGCAGAAAGGGGATCTCCAGGTGTTCGAGGAGCTGTTCAGCTTCGCCTGTCCGAAGTTCCTCTCTCCTGTCGTTCCCAACTACGACACTGTGCATCCCAACTATCACAAGGAGCCCTTCCAGCAGCAGCTCAAGGTGTTTGCTGAAGAGGTCCAGCAGCAGGCCCAGCTCTCCACCATCCGCAGTTTCCTGAAGCTGTACACCACAATGCCTGTGGCCAAGCTGGCCGGGTTCCTGGACATGACCGAGCAGGAGTTCCGCATCCAGCTGCTGGTGTTCAAGCACAAGATGAAGAACCTGGTCTGGACCAGTGGCATCTCGGCTCTCGATGGCGAGTTCCAGTCAGCCTCTGAGGTTGACTTCTACATCGACAAGgACATGATCCACATCGCAGACACCAAAGTGGCTCGGCGCTACGGAGATTTCTTCATCAGACAGATCCACAAATTTGAGGAGCTGAACCGAACCCTGAAGAAAATGGCGACGGCTCCAGCGACGGCCACCACCAGTGCCAGCACCGCCACCGCTTCCCGGGCCACCTGAAGGGCGTCGGGGCAGAGGAGGGCGCGCATCTTTCCCACAGAGAGCAGTCTGGGCAGAGGATGTGCTTGTTTCCCCTTAAAGAGCAGTGAAAATCCACGTCTTGCATTTGtaatcaaaaaacaataaaaataagtaaatgtt

Function

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15029 EIF3L; translation initiation factor 3 subunit L

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203242 lncRNA upstream 276 20474671 ~ 20474889 (+) True G161469
TU203158 lncRNA upstream 238774 20236177 ~ 20236391 (+) True G161392
TU203034 lncRNA upstream 966643 19508243 ~ 19508522 (+) True G161285
TU203031 lncRNA upstream 1017413 19455088 ~ 19457752 (+) True G161282
TU202880 lncRNA upstream 1551493 18923449 ~ 18923672 (+) True G161170
AMCG00001941 mRNA upstream 134508 20332375 ~ 20340657 (+) True AMCG00001941
AMCG00001942 mRNA upstream 144279 20314621 ~ 20330886 (+) True AMCG00001942
AMCG00001944 mRNA upstream 168856 20304627 ~ 20306309 (+) True AMCG00001944
AMCG00001940 mRNA upstream 177849 20292302 ~ 20297316 (+) True AMCG00001940
AMCG00001931 mRNA upstream 212203 20250978 ~ 20262962 (+) True AMCG00001931
TU202872 other upstream 1573447 18899337 ~ 18901718 (+) True AMCG00001889
TU202803 other upstream 1802744 18670282 ~ 18672421 (+) False AMCG00001880
TU202641 other upstream 2258027 18216575 ~ 18217138 (+) False AMCG00001883
TU202633 other upstream 2274310 18187902 ~ 18200855 (+) False AMCG00001881
TU202413 other upstream 3012231 17417351 ~ 17462934 (+) True AMCG00001846

Expression Profile