RNA id: AMCG00001948


Basic Information

Item Value
RNA id AMCG00001948
length 3360
RNA type mRNA
GC content 0.60
exon number 18
gene id AMCG00001948
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 20363308 ~ 20392326 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGAGAATGGGCATAATTAGGAGTGCAGGTGAGAGCGATGCTGCAGTGAGAAgtgaggggagaggagagaagagcgAGGAGGACAATGCTGGCCATGCTCAATCCCAGCGGCCAAATGTAGCCAGACAATGGCAGTGTGACTGGAGGAGAGGCGGCGCCATGGTGAGGCGGGCGAGACAGCAGGACCTGGCCTGGGATGGAGATAATTTGCCCATCAACAGCTGGCCTTCCCTTAACCCTGACCTGCTACTGACCGGCAGTCGCTGTGGACAGTACAGTAGTGTCGTGTCTTTGCTTAATGACTATTCTCCATCGGCCTGGCTGTGCAGTCGCCACCTGGTGGAGATTCTTTGTGTGCCTGGGATCCTGCCTGTGCCCCGTGTGAACCTCAGCCTCAGCCTGGAGATGACTGAGAGCCCCTGTATGTATCGGTGGAGGTGTAGGCAGTTCACTAGCAGGTCAGTGACCCGCACTCACAGCACCCCGCTGTCACTATGCTTTCTAAAGGGCATGAGGCAGTGTAGGCAGTGCCAGGCTGGCGGCGCCCCCTCTTGGCTGGGCTGCAGGTGTGGGAGTGACAGGCCGCCCCCGGGTCCGGCGCTGAGTGGGCTCTTCCGATGGGCGGGCCGCGGTGTCTCGCAGGGCTCCGGCTGGCGCAGGCGCAGAGGCGCTTCATTCGCGGTCGCGGAGAGACCTGCAGGAGAGGAGCGCCCTGCCGGAGTTACTTCGCTCTCAGGCGGCTTTAACGCGTCCTTCATTTGGATGAGATGCACAGCGCCGGGCTGCTCTCCGCAGCGCCTCGGGGGTGACGGTGACACAGGACTGTGTGTGGGTGCTGAGGACAGAGCTGAGATGGCCAAGCAGGAGCGCAGCGTGTGTGTCCTGCTGCCTGACAAGGAGCGGCTGGACATCAACAATGAACATATCTTTATGGACCTGGAGCAGAAGCTGACCAAGTACTTCCCCAAGGAATGGAAGAAAGACGCCAGTAGGGGCTCGGCCCGGCCTGGTCCTCCGCTGGTGGCCTGCCTGAGGGTGCAGTACTACGTGGAGAACGGCAGGCTGATCAGcgACCAGAAGGCCCGGTGGCTGTACTACTGCGATCTGCGCCAGCGCGTGCGGGGCTCCCGGTGCCGGCATCGTGAGGAGGCCTACTTCCTGCTGGCAGCCTATGCCCTGCAGGCCGATCTGGGAGATCACAGCGACCGGGAGCACAAGGGGCAGTACTTCCAGCCGCAGGACTACTTCCCTCCCTGGGTGGGTGCTGCACCGGGGCGTGGGGGGGCGCTCTGGAGTGCACAGGGCAGGGCGATCCTGTGCGATGGCAGTGTAACAGCTGTGCTCTCCCCCCAGATCATTGCCAAGAGGGGCTGTGGGTACATCCTGCAGCACGCCCCGGCCATGCACCGCGAGCAGAGGGGCCGCCCGGCCCGGGAGGCGCTGCTGCTGTTCATCAGAGAGGCCTGCCGGCTGGAGGACGTGCCCGTGCACTTCTACAGGCTGCACAAGGACAAGAATGACGAGCACAGTGCCATCCTGCTGGGTCTGACCCTGCGAGGAATGTACATTTATCAGGAGCTGAACAGTGATCGGCAGTTGCTGTACGAATTCCCCTGGGCCAACGTGGGCAGACTGACATTCCTGGGAAAGAAGTTTGAGATCCAGCCGGACGGCTTGCCTTCAGCACGGAAGCTGGTGTACTACACAGGCTCCCCGTCCCGTTCCCGCCACCTGCTGCAGCACCTGAGCAACAGCCACCGCCTCTACCTCAACATCCAGCCAGCTCTGCGGCAACTGCGCCAGGCGGAGGAGGCCGAGGAGAAGAACCGTTACCACGAGTCCTACATCAGTGACTCTCTGGAGGTGCTCCTGGAGCCGCTGCAGCACCCGGGCAGCGGGGGAGGTGACCTGGGGGGCAGCCCACGCCTCTGGCGTCGCTCCGCCAGCAGCCACGGCAGCTCTGGCATCGAGGCCGGCCCCCAGCAGCGCCTGTCTGTGGAGATGTCGGTGGATGCTCCCTTCTCTGCCACGAAGTCCTTCAGCTCTGGTGACAGCCACGGCAGCTCCCACACCTCGGGCATCGACACGGGCAGCAAGACGCGCCCCGAGGAGGACTGGCATGACGACGAGATGCAGCTGTTGGTGGACGGCCCTCAGGAGCTGTGTGTGGACGACCCAGTGGAGATGATGCGATTGGCCGAGCTCATGGAGGGTGTGTCAGTGGAGCCTCGTGGGATTGGCCAGGGGGAGCACTGGAAAGACGCCAGCCCTGTGAGTTGTGTGGATCCTCCCGCAGTGCTGCGCAGTGCGGACTCCTTGGAGCAGGTGTGCCATTGGAAGGGGTGGAGCAGTGTGGACCGACACAGCCGGAGTTTGGACGATGTGAGGCTGTGCTCCCCCGCCACCCCGCTGGAAGCAAGCCTGCACACAGACGCCTCCCAGAGCTACACCTTCGGCCTGCGCGCACCCACGGACCAGAGCCACAGCACCAGCTCCTGCACGGCCGACGGCCCGGGCAAGCCCTCCTTCTACGGTAAGAGGTCGCTGAACAGCCTGTCTCTGGACCTGCTGGGCGACGAGCTGCTGGAGTTCATCCTGTGAGGGGGGCTGCTCTCAGAGATGGACCACAGGGCAGCACTTTACCTGTGGAGGAGGGCCTGTGGGGACACTGCGGGGACACAAGCCCAGGCAGGAGGGACCCACTGCCCAGGGAGAGGACACGGAAACGCTGATCCACACTggagtgcaggagagagagagagagagagagagagcacctCTGCTCACACAAGGACACGGCCACATCCCTCAGAGCAGCTGGGCTCTCGATCCACAGAGTACTGCTATAtgagacttttattttaaaaagtgatgtATAATCCTCAGAAATTGCCTGGAGCAACATGTGGGGTCTGCAAAATGAAATGGTGTTCCCAGAACATAACGTGAAAAGTGATTCAGAAGTgttcttgtattgttttgtgtaatgCGTGTCAGTCAGTATTACTTGTTCAGTAGCTGTGAGCTGGCGGCCCCTTGGACCCGGACACATGATCAGTCTCTTCCTGGTCGTCGGCCACCTGAGACCCTAATTTATAAGCCACTCTGCCGCTTGCCTCTGTACCAATCAGTGTCCGTGGCTTGGCTATCacttgtgtgtattattattaatttaaacctAGCAACCAAATTGAACTGATTCAAAGAATTTGCCAACAATGTTGATCTTCTTCGTGCCAGTATTAATTGTAGACCTTGAATATGTtttacacacatgtatttttacactttgcaTTTTTCTATATAAAAGTCCTTGTACCTTTTGGTTGTCTCGGATGTTCTTGACATGCTCTCCGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU203216 lncRNA downstream 17967 20340425 ~ 20345341 (-) True AMCG00001945
TU203157 lncRNA downstream 137389 20225657 ~ 20225919 (-) True G161391
TU203098 lncRNA downstream 269963 20092113 ~ 20093345 (-) True G161346
TU203051 lncRNA downstream 905566 19455124 ~ 19457742 (-) True G161302
TU202931 lncRNA downstream 1278332 19084112 ~ 19084976 (-) True G161206
TU203248 lncRNA upstream 46142 20438468 ~ 20438673 (-) True G161475
TU203244 lncRNA upstream 83602 20475928 ~ 20478231 (-) True G161471
TU203253 lncRNA upstream 85982 20478308 ~ 20478719 (-) True G161480
AMCG00001943 mRNA downstream 857 20347992 ~ 20362451 (-) True AMCG00001943
AMCG00001945 mRNA downstream 15803 20344739 ~ 20347505 (-) False AMCG00001945
AMCG00001933 mRNA downstream 79806 20263404 ~ 20283502 (-) True AMCG00001933
AMCG00001938 mRNA downstream 232314 20101294 ~ 20130994 (-) True AMCG00001938
AMCG00001939 mRNA downstream 264161 20097552 ~ 20099147 (-) True AMCG00001939
AMCG00001947 mRNA upstream 14005 20406331 ~ 20411457 (-) True AMCG00001947
AMCG00001949 mRNA upstream 51051 20443377 ~ 20468386 (-) True AMCG00001949
TU202858 other downstream 1512424 18835782 ~ 18850884 (-) True G161153
TU202574 other downstream 2452455 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 2497990 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 2831318 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 3270859 17091418 ~ 17092449 (-) False AMCG00001843

Expression Profile