RNA id: TU197970



Basic Information


Item Value
RNA id TU197970
length 1326
RNA type TUCP
GC content 0.43
exon number 1
gene id G157196
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 587975 ~ 589300 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AAAACCAAGCatttccaaattctcttacataGTGGTGGCCAGTATGGGGATGATGACGGATATTTGCTACAAGTCACAGATTGCTCTGCAGTATTAATGTGCATGCATTGACAGAATAGCCTGTATATCCGACTTTGCCTGAAAGACGAACCTCGCGTAACGGTGTCGTCAGCAAAGCCAGGATTGTACGAACTGATCATTGACTTTTGGAGTGTGTAGTGATTTCAACTCCAAGGAGGAAAACCACATAAAGTGTGGGCGAGTGATTGAAAAGTTACCTTCTGTAAACATGGATCATCTGTGTCAGAAGGCAAGCCGGTGTGTCCTTAAGGACCGAATTAAAAACGCCATAGCAAAGTGTGCGAGCACTTCATTACAGAACTTAGAGTCTTAGAgttaacaaatgaaaaagtgatTAAGTCACAACTGAAATTAGCTGCTCTGTATGGGTTAGCTCAGTGTGTTAAGATCTTATCTGATCATTCTGCCGAGGTAGAAACTAAATTGAAACGTGTTAGCGATGAGAAATCTGCCctgcttttacaaaatgcagagTTGAAACTTCAGATGCAGACAGTGAGCAATAATGCTGTGTTTCGATAaagagcagcgcagatctgacAATGAGAGTCTGAGAAAAGAGAGCCGCACTTTACAGCAACAGTTCAATGATTGCCAGGCAGCTCTCAGACACACTGCGACCAAAGTTTCCCAAAGTAATCAGTAAACAGCTAGTAATGCGCTTAAAAACTAAACTAGGCATGAAAACTGCTATCATTGCAGCTGTCGGAGGTCCGTGTTGTCCTGAACTGGactctgatgatgatgaatattggGAAGAGCTAGAGAGAGAGGCGTGGGACTGTGAATTCAATCCTGAATCCGCTCCCGTCTGTGTGCTTCGCACTCGGGCTGCAGTGAAATGCAGGATGTTAAGGACGAGTGACACAGAGCCGAGTTCAATACATGAAAGTACGAGAAGACGAAGTCAttcagaaaacacagacagctCTGAAGATCCTCAAGTCAGTAATGAGCCTCAGACAACTAAGCGTCTGACTGCTCTGGAACTGAGAGCATTCAAAGATGATTTGGGTCCAATTACTCTAGAGACAGATTTAGAGGAATTAATAATTCGACTTTTATCTTGCATTCAGTTACACCCACAACTGAACGACCTGCATTGGAAAACAATAGTTTTAGCTGCATGTTCTCCAACTTTAAGATCCCTGTTAAGTGTTGATGAAGTGGGGAGAGTGACTGCGTGGACTGAAGTCTTAGAGTTAATAAGCGAAGCTTGTGGCTGGAATGCAGCAGATTGGGGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU197969 lncRNA upstream 9855 577921 ~ 578120 (+) True G157195
TU197882 lncRNA upstream 485704 101082 ~ 102271 (+) True G157126
TU198025 lncRNA downstream 206018 795318 ~ 795557 (+) True G157231
TU198038 lncRNA downstream 349939 939239 ~ 939481 (+) True G157244
TU198041 lncRNA downstream 365295 954595 ~ 954974 (+) True G157247
TU198050 lncRNA downstream 512609 1101909 ~ 1104516 (+) True G157256
TU198135 lncRNA downstream 1102377 1691677 ~ 1694985 (+) True AMCG00001392
AMCG00001372 mRNA upstream 44441 533864 ~ 543534 (+) True AMCG00001372
AMCG00001373 mRNA upstream 58186 528110 ~ 529789 (+) True AMCG00001373
AMCG00001371 mRNA upstream 175134 136889 ~ 412841 (+) True AMCG00001371
AMCG00001374 mRNA downstream 5473 594773 ~ 606467 (+) True AMCG00001374
AMCG00001378 mRNA downstream 104468 693768 ~ 699275 (+) True AMCG00001378
AMCG00001377 mRNA downstream 142864 732164 ~ 746098 (+) True AMCG00001377
AMCG00001376 mRNA downstream 197752 787052 ~ 793305 (+) True AMCG00001376
AMCG00001375 mRNA downstream 209668 798968 ~ 805479 (+) True AMCG00001375
TU198192 other downstream 1382581 1971881 ~ 2000928 (+) True G157369
TU198685 other downstream 3285909 3875209 ~ 3876273 (+) False G157781
TU198688 other downstream 3285909 3875209 ~ 3880779 (+) True G157781
TU198750 other downstream 3463697 4052997 ~ 4062290 (+) False AMCG00001430
TU199079 other downstream 4792390 5381690 ~ 5383064 (+) True AMCG00001480

Expression Profile