RNA id: TU198192


Basic Information

Item Value
RNA id TU198192
length 1326
RNA type TUCP
GC content 0.38
exon number 2
gene id G157369
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 1971881 ~ 2000928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cactgttaaaatacacctaccattaaaattatagactgatcatttctttgtcagtgggcaaacgtacaaaatcagcaggggatcaaatacttttccccccactgtaaagataaaaaaaataataacagggtTCTTGACCTTTTCTCATAGAAAAATTCAAGATTTTTCCAAACTGCTTTGTAAGATTTCAAGGCAAATCTGTAGCCACTTTCTGTGTTAAAGAAGTGCATGTTTATAGAGTATTTTGACAAATACTGTGCAATTcaataaatcacaaaaataatgtgcaatgaataaattaacatatttaaataaacattaagtaTTGTGTATACCTTCCCCGATCCACTTCCCCGATAGATTCAGATTCTCCAGTAACTTAAAATAATAGGCTTATTGAAATTACATACCTGGACATCTACCATTATTTGGTTGTGTTAAAGTACAAAACATTTGTGTTAAAGTATCTGTACATACTCAGgggtgtgggggaaaaatatagaaatcctatcctgcctctgtccttggtgtgctgttacatGTTGAAGAAATCTCTGAGAACTTGGAACAACAGTTGAAAGGTAGGGTAAACAATTTTTCTATGGCCCTTGACGAGAGCTGTGATGTTAAAGACCAGCTGTTGATTTTCATACGAGGCAATGCTACAGATTTTACATTGACTGAAGAACTTGCGTCAGTGCAGTCAATGAGAAACTGTCCGGAAAATATATGATGGCTCAGTTTGGGGAAGGTGCTGAAAAGAGTGTGGGACCTGAAATCAGAGATCGATTTATTTTTGCGAACGAAAGTAAAAGATGCAGACTTCCCTCAACTGCATGACGCGGACTGGCAGACTGATTTTGCACTTGCCCTTGATATCATGGGTCTCCTGAATGATCTGAATTGTAAACTACAAGGAAGGAGGCTTTTTGCTTATGACATGTACTCCCTTGTCAAAGCCTTTATGGCAAAGTTGCTACTTTTGTCCTGTCAAATTGAAGGCAATAACTTCACACACCTCCCAACATTGCAACAGATTACAATATCTCATGTGAACTGGGAAAAATATGCATCTCTACTGCTCGCTTTGCACGCTGAATGTTCACGCCggttaattgattttaaaatgttagaaaatgaCATGGCTTTGATTTCGTCCACTATCACATTCAGTGTGGACAACGCTCCTATTGATCTCCAGCTTGAGCTTATTGACGTGCAGTCTGATGCACTACTTGCAGAACAATTCAAATCTGCACCACTCCTGAAGTTTTATGCATCTCTCAATGAACAGAACTTTCAAAAGATCAGGGCCCATGCTCANNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198184 lncRNA upstream 74601 1897074 ~ 1897280 (+) True G157361
TU198152 lncRNA upstream 180354 1789391 ~ 1791527 (+) True G157336
TU198142 lncRNA upstream 260066 1708945 ~ 1711815 (+) True G157327
TU198135 lncRNA upstream 276896 1691677 ~ 1694985 (+) True AMCG00001392
TU198136 lncRNA upstream 276896 1691677 ~ 1694985 (+) False AMCG00001392
TU198195 lncRNA downstream 3205 2004133 ~ 2006321 (+) True G157372
TU198197 lncRNA downstream 3205 2004133 ~ 2083118 (+) False G157372
TU198198 lncRNA downstream 6392 2007320 ~ 2011467 (+) True G157373
TU198312 lncRNA downstream 414588 2415516 ~ 2415966 (+) True G157461
TU198324 lncRNA downstream 504648 2505576 ~ 2505911 (+) True G157473
AMCG00001394 mRNA upstream 78183 1722432 ~ 1893698 (+) True AMCG00001394
AMCG00001392 mRNA upstream 276895 1691676 ~ 1694986 (+) False AMCG00001392
AMCG00001393 mRNA upstream 304178 1655576 ~ 1667703 (+) True AMCG00001393
AMCG00001388 mRNA upstream 333969 1632813 ~ 1637912 (+) True AMCG00001388
AMCG00001391 mRNA upstream 371894 1576221 ~ 1599987 (+) True AMCG00001391
AMCG00001395 mRNA downstream 19395 2020323 ~ 2022140 (+) True AMCG00001395
AMCG00001399 mRNA downstream 55959 2056887 ~ 2058997 (+) True AMCG00001399
AMCG00001400 mRNA downstream 75825 2076753 ~ 2104545 (+) True AMCG00001400
AMCG00001407 mRNA downstream 211323 2212251 ~ 2218503 (+) True AMCG00001407
AMCG00001403 mRNA downstream 379316 2380244 ~ 2393334 (+) True AMCG00001403
TU197970 other upstream 1382581 587975 ~ 589300 (+) True G157196
TU198685 other downstream 1874281 3875209 ~ 3876273 (+) False G157781
TU198688 other downstream 1874281 3875209 ~ 3880779 (+) True G157781
TU198750 other downstream 2052069 4052997 ~ 4062290 (+) False AMCG00001430
TU199079 other downstream 3380762 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 3596329 5597257 ~ 5622676 (+) True AMCG00001486

Expression Profile