RNA id: TU198512


Basic Information

Item Value
RNA id TU198512
length 1255
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G157635
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3405148 ~ 3406402 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aacaccCCACTCTGAGGGTCcgacgaggcacctcgtcccccaccatggaagtctgacgAGGCACAACCCTCCTCTGAGGCACCCCATCACGGAGGGCCAATGGgacatccacacccaaggtctgatgagccatcgccatccaaaggctgttgatggtccaacccccccacccccgatggccagcgagaggcctcctccagagggaagaccacagccagcagcactgatttaagaactttctgatctccttgctgctgtaacaactatactgcctggaggggaggcaaccattaggcctaggccctaagccatgGAACCCCagagattattttttctcctacatgctgtggaagaacaatcagtcttcaatcaggttggaacattcgttgcaatgcctttattacacgtgACGTGGAGAACAgaagtgaatcaagaagatcctaAAGCTGCTCTGCTTCCATGCTAAAAGCcagagctttttatacacagaaaacaaagatctgtTAATAAGATTACTATTAATAAGTCATGACTATGTTATCTTTAAAGcttgctaagcagaatatattattagaggACAGAGTCCATGGAACAATACAAGGATTAAGGAGCAGACACtgaaatcatactgtttgtcatctccaagatgctcatcgaaaataacaaacaggggtcaaactaccttctggcctggctGTTGACTTGACCTTAtatttcttaagtatacattaagtaaaccatttgtgaggggaatttctaactttacttccacaatgccatccataggatttttttgttattctctcATCCGTgcttaaatggtttatttaaatgttcacttactttatttaaGATCATGTGAAGTATTTACaggtctgtatttatttattttactttattgtattcatgtattttattttgctgtactttgttgtatgttttccagtctgtaaagcactctgtggctacctgTGAACGGCACTATTAGGGCTGgccgatatgacgatatatatcatatgacgatagaaaaacgtctatcgtttcatattatgctatatcgtttatatcgtagtgtcgcaaattgcaatctttacggcagtattttttgtcattaagacattttgcgttcttcccggttcttccacacgtgtcagaaatgtgcatcagaaacacagacagacatgaggagagagaactgacacacaataaccaacacaaccaagagatactttaatgtgCAAGCGCACACGCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198509 lncRNA upstream 3893 3394245 ~ 3401255 (+) True G157632
TU198476 lncRNA upstream 85215 3316486 ~ 3319933 (+) True G157602
TU198454 lncRNA upstream 129533 3225589 ~ 3275615 (+) False G157584
TU198455 lncRNA upstream 133049 3225589 ~ 3272099 (+) True G157584
TU198452 lncRNA upstream 183898 3217077 ~ 3221250 (+) True G157583
TU198517 lncRNA downstream 29943 3436345 ~ 3437663 (+) True G157640
TU198555 lncRNA downstream 82661 3489063 ~ 3493169 (+) True G157668
TU198626 lncRNA downstream 342152 3748554 ~ 3765362 (+) True AMCG00001436
TU198690 lncRNA downstream 475440 3881842 ~ 3917073 (+) False G157783
TU198691 lncRNA downstream 480396 3886798 ~ 3917073 (+) True G157783
AMCG00001410 mRNA upstream 482869 2921972 ~ 2922279 (+) True AMCG00001410
AMCG00001406 mRNA upstream 748146 2618236 ~ 2657002 (+) True AMCG00001406
AMCG00001403 mRNA upstream 1011814 2380244 ~ 2393334 (+) True AMCG00001403
AMCG00001407 mRNA upstream 1186645 2212251 ~ 2218503 (+) True AMCG00001407
AMCG00001400 mRNA upstream 1300603 2076753 ~ 2104545 (+) True AMCG00001400
AMCG00001415 mRNA downstream 13002 3419404 ~ 3420432 (+) True AMCG00001415
AMCG00001422 mRNA downstream 116936 3523338 ~ 3530730 (+) True AMCG00001422
AMCG00001420 mRNA downstream 140470 3546872 ~ 3554580 (+) True AMCG00001420
AMCG00001421 mRNA downstream 158118 3564520 ~ 3587440 (+) True AMCG00001421
AMCG00001439 mRNA downstream 201913 3608315 ~ 3648819 (+) True AMCG00001439
TU198192 other upstream 1404220 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 2815848 587975 ~ 589300 (+) True G157196
TU198685 other downstream 468807 3875209 ~ 3876273 (+) False G157781
TU198688 other downstream 468807 3875209 ~ 3880779 (+) True G157781
TU198750 other downstream 646595 4052997 ~ 4062290 (+) False AMCG00001430
TU199079 other downstream 1975288 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 2190855 5597257 ~ 5622676 (+) True AMCG00001486

Expression Profile