RNA id: TU198688



Basic Information


Item Value
RNA id TU198688
length 695
RNA type TUCP
GC content 0.40
exon number 3
gene id G157781
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 3875209 ~ 3880779 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ACATGGACTTTACCCACATATAATTACCATAACACgatattaaaatcaatgaataggattttaaaataaaattcataaTTTATGTACCGATACTTATTTTGCGGAATTACGTCTTCTTGTTCGTATACGTTTACTTTACTGAAACATCCGGGAAATTAGGTGTTTGTAAATACACTAACTCGTCAAGTTTAGTGGTCATAAACTTATCGTTTGGTAGCATGTATTGATTGCTGACGACGCTTTAGCTTAGCTACAATTAAACTGACAGTATGACTCAAGTAACAAAGGAACAATTTGGTACAATACCACAGAAAGGAAGCGTAGaaaaatttatattaaaatccGACGATGTGGTGGTAGAAATCATATCTCTTGGATGtataattacagctttaaagacGAAAGACAAGCGAGGCCAATTTGATGACATCGTTCTTGGTTTTGATAATCTAGAGGGATACTGCTTTGGCAATTCGCGGTATTTTGGAGCCGTTGTGGGACGGGTAGCCAACAGGATCGCCAAAGGGAAGTTCAGTGTGGATGGAAAGGAGTATCAGCTTGGCATCAATAACGGGCCTAATGCTCTGCACGGAGGACTGGAAGGCTTTGACAAGattgcagacatccgcaggctcttcaatacgccaccctcatctcccatcacactgaaacctcccaccgatcaagcttccttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU198626 lncRNA upstream 109847 3748554 ~ 3765362 (+) True AMCG00001436
TU198555 lncRNA upstream 382040 3489063 ~ 3493169 (+) True G157668
TU198517 lncRNA upstream 437546 3436345 ~ 3437663 (+) True G157640
TU198512 lncRNA upstream 468807 3405148 ~ 3406402 (+) True G157635
TU198509 lncRNA upstream 473954 3394245 ~ 3401255 (+) True G157632
TU198690 lncRNA downstream 1063 3881842 ~ 3917073 (+) False G157783
TU198691 lncRNA downstream 6019 3886798 ~ 3917073 (+) True G157783
TU198740 lncRNA downstream 142018 4022797 ~ 4023248 (+) False AMCG00001433
TU198757 lncRNA downstream 186309 4067088 ~ 4067627 (+) True G157834
TU198914 lncRNA downstream 754585 4635364 ~ 4652000 (+) False AMCG00001457
AMCG00001437 mRNA upstream 103474 3766101 ~ 3771735 (+) True AMCG00001437
AMCG00001436 mRNA upstream 116126 3753386 ~ 3759083 (+) False AMCG00001436
AMCG00001438 mRNA upstream 133810 3676483 ~ 3741399 (+) True AMCG00001438
AMCG00001439 mRNA upstream 226390 3608315 ~ 3648819 (+) True AMCG00001439
AMCG00001421 mRNA upstream 287769 3564520 ~ 3587440 (+) True AMCG00001421
AMCG00001441 mRNA downstream 7463 3888242 ~ 3894909 (+) True AMCG00001441
AMCG00001440 mRNA downstream 23698 3904477 ~ 3914556 (+) True AMCG00001440
AMCG00001429 mRNA downstream 105943 3986722 ~ 4013882 (+) True AMCG00001429
AMCG00001433 mRNA downstream 142391 4023170 ~ 4023910 (+) True AMCG00001433
AMCG00001430 mRNA downstream 164577 4045356 ~ 4062333 (+) True AMCG00001430
TU198192 other upstream 1874281 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 3285909 587975 ~ 589300 (+) True G157196
TU198750 other downstream 172218 4052997 ~ 4062290 (+) False AMCG00001430
TU199079 other downstream 1500911 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 1716478 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 1989940 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 2017456 5898235 ~ 5900998 (+) True AMCG00001493

Expression Profile