RNA id: TU198915


Basic Information

Item Value
RNA id TU198915
length 4157
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id G157966
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4696554 ~ 4702861 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGGACTTCAAGACAGAAAGCAAGTGGTATCCTTTTCAGATTGAACAGTTGTAAGTGTGtatgacaatattttaaatattttaaatgtaaaaaaaagtcaaataaaaaaacatatacatgtgtgtgtatatagtctCCAGGTGTAATTTACAATCACatacagtaaaatgaaaaacacttaaTGGACTATGGAAAGCAAACGTATGAAAGAAGTGGGGGTACAAAGTGTATATGGAGCCTACGTAATATAATAAAGCATATACAGTTTGGATgtactaccctcaaattaaagaagaACGCTTACACTTCAAGctcatcttgattgtttcctttcaaatccattatggtgccgtacagagtcaaaatgatgacacttgtgtcactgtccaaatatttatggacctaactgaacatttttgtgttgatcagtggctcaaactcctgattaaatccattctgatttcatgttgtaacacaatgaaatatggagtccaaggggggtgaatacttttgagagcctcTGTATAGGCTACACACCTacacaataataacagtttTTATTCTTCTACAGTTAACACAGAGACGTGTGATGAATGTATCGCCGACAACTGGGCAAGTTGCAATGGCACAGAGACTGTTTGTTTGCCCGAGGagaagtgtgtgtctgtggcttCCAGAATTATCGAGGTTGTTCCACTGGGCAGACAAGGCACTAGACGGAAAATCACCCCTGAAGTCCGAAGGGCCTGCAGTGAGCCCCACTTTACATCCTGTGACACATTAATCTCCTTCAACTTCAAATTTGCATCCCAGATGATTCAGAGGAGCTGCAATGGCAAGACAATCGGAGtagCCTTGGAGGAAAGACCCAATGGTCGGCTCTGTTGGGGGTGCATTGCAGTGGAGTCTGAATGCACCAGAAAGGTGGAATGCAGGGGGGGCGAAGACTATTGCATTAAAGTGGTCGatGACAACTATGCTGTGACCAAGATGGTCAGTAAGGGATGCGCAACTGAAAGTTTGTGCAAGCTGCCCTTGAACGGGACCAAGGCTTTGGGAACGGTGATTTTTGGAAAACGATACTGCTGCACAGGGAATCTCTGTAATGGCGCCTGGACAGGGGCTTGCCACTCTGCAGTGTTGTTTCTCTTCCTGCTGCCTCTTTGGATCTTTCTCTGAACACTCTACTGCACTCAGTGTACACACGTCCTCACTGTGTGGACTTCAGAGAACACCAAAAAGTCtgctataataaaaatattaaacagtaACATAGCTTAAAGCACCCAGTGCAGACACTGAAACGGCCTTTTGGGTTGCTCGGTCTCATACCTGTGGTTTTACTGAATGTAGCACAATGacagtattattgttgttgcggGCAGCTATcagcaacccccccacccaacaaAAGGACATAGCTCCTGTTCCACCCTCTAAATTATGCAATTATCAAGAACCACAGCACTGGATTTTTCCTACATCAACTGCAACCTTCCAGTACAAGATAGTTTTGGCATGGAGTAAAATAcaggcattatatatataactacaaTATTGTGGTTGGTCTTCTATAATTGTTGGCTGTAGATTTGTCTGTTcagaaataaagtaatattaagctcCTGTGattatttgcttatttgttttacacagaGGGGCTTTTTGTCGGTTCACCCTGGACACCATAATTTATAGCCTACTTATAGAAGTATGGTAATTTATTCACAATCACTGCTCTTATACATATCCTTAGAAGGACTAGCAGGATGAATATGAGATGCAGACCAAGCAGAAATAATGTACGTATATGGTGATATCTTTCAAGTCAGCAATATTTTTCAAGTCAAGGAAACTATGGGGCATTGGAATGAAATGCAGCTGTTATTGGGGCACTGAGCAAGAGCGAGCACTGAGCAGTCAGAAAGAGTGAGCAGAGAGCAACAGCGAGCAGCAGCCACAGTCTCCTAACAAGCCGAACTGAACTATCAAACTGAACTATCAAACTGGCTTTAAACTTAAATTAGAAACATAAgtacagtttttctttctagATAACCATTGTAGGCCAGGTGTCATAAACTTGGGAACAATTCTTGAGAAGACAACAATGTTTCTATAAAATAActgcatgtattgttttttatggttgttgttgttataaaacttaaacaaaaactaaGGACCAAActaaacaatgtctttgataaattACGATAATTGATGAAaatggtgtaaaataaataaagaaataaatcctAAAGCAGGATCAAAGTACTAATTTTCATGGCAGCTACAAAGCTACAGCCTTCTCTTTAACTTACTCCATTTGTCCTGCTTTTATACCCTTTGTTTCAATGGCCCCTCCCTCAGACCATACCATTTCCCACTCAGGGGAACTAAGAGGAAAAATAGGCCTACATTCAAAATCACATTTGTTATCAATGAAACAAACtctgttataaaaatataacaaaaactaaatgtagAAAATGGCCTCTTTAATAGCATCCTTGCCCTCACCAACATGGCTacccacaaaaacaaagtgaaatattttttccaaccTTATAAACCCTTTGTGCAAtgccatacatttaaaacatgacatttggGTCTGTCTGTGCTTTGTTTTACCTCCTGTTATGAAGTACACAATAGCACTTAAACCATTCAAACAGTCACTGGTTTAAACAAAAGGATAAGCCTTGCTCCATCACAATAACCATGGCTTCCTTGGTTGCAGACTAAACTCTTGCCTGCCTACTGTGTAATATGTTCTGTTTAGTTTGCTCAGCTGATCTTCAAGATGACTTTACCTGTTTGTAAGAGAATTTCATATGtatggtttttcagtcaatctaaataaatagtttaactgAAAACtaataggtcaattggtttctcttttaagattatttttagagggaagGCACGGTCAAgtcaataatcatttatttgtgacaaaaatagaaaactgatatcattcaattatgttactgaacataagtaatattaagcctctgctggattacagaaaagATAGGATATTACCCCCTATTCTCCTCTTCTCCGCACAGGGCAGCTTAGGTCAATTTGGTCAGGCTGGCAGtgggtgtgtctctctcacttcCTCCTGCTCTTGTTCTTGTCCTTGTCTCCAtttcctctttcttcttctcccctTCTCTTTGTCCGTTCCTTCTTTTATAANNNNNNNNNNtaaccaatcacattttgccaaCATCACAGCATGGTTTGGGTGtgtgatacaaatatatatcgATATGGCATTAAGAAACCTAATTCCTTATCCTCTTTGTGgtatttggctaggagccaatcagaggacaggtatcCTGGACCTTGTACTCGTATCTCTAGTTTAACTGCTAGCAGGGTCCCTCGGAATCTAGGGAACTAGGTAAAAAGGGGAGATGTCTGTTTTCTGTACCAAACCGGACAGCATAGAATTTCCTATAGAAAAATACGTTCTAACAAATTATATCTTACATGTTCTAAAATAGAGTTGGTGGATAAGATATGTGTACTGGAGGAATATATTAAGTTACTGAGTAGTAAAGAGAAACTTCATGTTGACACTCAAAAAACCAGGGGAAAAAATTCAGAATGTAATATCTCTGGTCCACTAGCAGTTCTACATAGAGGGGATGAACCCTTTACCAGGCTATCCTCTCTAAACTGCTGGCTGGCATACTGGTGTGCCTCAAAAAACATGGCTTTATTAACACTTGGGTTTGTTGTGGGGAAAGACCCAAATTGGAGGGTATTTTTCATGTTATCACAACTATTTCTAGTTATGGCCAACTATTTTCAGCAATGACTTTAGGAGCACCACCCAGGCTGCAGTCCTGCTATATTAGTTTGTAGTCTCCTTACTCCCCTCATTCACATAATTATTTCTTTGACCCAGGGTGACTGTTGAGGGACATCATGAAttgtataatttgaaaaaattaaactgCCACTATAATACCAACCTATAGCCGTACAATAGTCTATAATTATCCCTGGAAATTGAAATAATCCACTAGGGGGCAGTACAAACCACAAATGTAATAACTACAAATGTAATGATCCTCTGCCCACAAATGTAATAACCACGAGGTCACAAACATAATAATGTATACCAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198914 lncRNA upstream 44554 4635364 ~ 4652000 (+) False AMCG00001457
TU198757 lncRNA upstream 628927 4067088 ~ 4067627 (+) True G157834
TU198740 lncRNA upstream 673306 4022797 ~ 4023248 (+) False AMCG00001433
TU198690 lncRNA upstream 779481 3881842 ~ 3917073 (+) False G157783
TU198691 lncRNA upstream 779481 3886798 ~ 3917073 (+) True G157783
TU198925 lncRNA downstream 11034 4713895 ~ 4714160 (+) True G157975
TU198941 lncRNA downstream 169834 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA downstream 169834 4872695 ~ 4875144 (+) False G157985
TU198982 lncRNA downstream 185253 4888114 ~ 4888352 (+) True G158014
TU199069 lncRNA downstream 610207 5313068 ~ 5315236 (+) True G158089
AMCG00001457 mRNA upstream 44607 4623467 ~ 4651947 (+) True AMCG00001457
AMCG00001452 mRNA upstream 177426 4518304 ~ 4519128 (+) True AMCG00001452
AMCG00001453 mRNA upstream 178641 4512184 ~ 4517913 (+) True AMCG00001453
AMCG00001450 mRNA upstream 185698 4500349 ~ 4510856 (+) True AMCG00001450
AMCG00001451 mRNA upstream 200703 4489453 ~ 4495851 (+) True AMCG00001451
AMCG00001463 mRNA downstream 67756 4770617 ~ 4779786 (+) True AMCG00001463
AMCG00001461 mRNA downstream 99311 4802172 ~ 4866884 (+) True AMCG00001461
AMCG00001462 mRNA downstream 166218 4869079 ~ 4870742 (+) True AMCG00001462
AMCG00001459 mRNA downstream 173287 4876148 ~ 4885603 (+) True AMCG00001459
AMCG00001460 mRNA downstream 211990 4914851 ~ 4939823 (+) True AMCG00001460
TU198750 other upstream 634264 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 815775 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 820281 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2695626 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 4107254 587975 ~ 589300 (+) True G157196
TU199079 other downstream 678829 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 894396 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 1167858 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1195374 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 1691242 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile