RNA id: TU198925


Basic Information

Item Value
RNA id TU198925
length 266
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G157975
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4713895 ~ 4714160 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttatttcaaatatgtgcCTTTCGGCGAATTTATTTGCATAgtttatttgttcatatttatcAGCATTATCAACAGCCATAGGCAAATTGTCCTTGCAGGGTGGCACGTTGGCCTCAGTGGGCGGCACGTTGGCCTGAGGGGGCGGCACATTGGCCTGAAGGGGCGGCATGTTGGCCTCAGGGGGCGGCACATTGGCCTGAGCGGGCGGCACGTTGGCCTGAGCGGGTGGCACGTTGGCCTCGTTCGACAGGTCTGTAGGGGCATC

Function

GO:

id name namespace
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0010467 gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process

KEGG:

id description
ko03010 Ribosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198915 lncRNA upstream 11034 4696554 ~ 4702861 (+) True G157966
TU198914 lncRNA upstream 61895 4635364 ~ 4652000 (+) False AMCG00001457
TU198757 lncRNA upstream 646268 4067088 ~ 4067627 (+) True G157834
TU198740 lncRNA upstream 690647 4022797 ~ 4023248 (+) False AMCG00001433
TU198690 lncRNA upstream 796822 3881842 ~ 3917073 (+) False G157783
TU198941 lncRNA downstream 158535 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA downstream 158535 4872695 ~ 4875144 (+) False G157985
TU198982 lncRNA downstream 173954 4888114 ~ 4888352 (+) True G158014
TU199069 lncRNA downstream 598908 5313068 ~ 5315236 (+) True G158089
TU199073 lncRNA downstream 651845 5366005 ~ 5367069 (+) False AMCG00001480
AMCG00001457 mRNA upstream 61948 4623467 ~ 4651947 (+) True AMCG00001457
AMCG00001452 mRNA upstream 194767 4518304 ~ 4519128 (+) True AMCG00001452
AMCG00001453 mRNA upstream 195982 4512184 ~ 4517913 (+) True AMCG00001453
AMCG00001450 mRNA upstream 203039 4500349 ~ 4510856 (+) True AMCG00001450
AMCG00001451 mRNA upstream 218044 4489453 ~ 4495851 (+) True AMCG00001451
AMCG00001463 mRNA downstream 56457 4770617 ~ 4779786 (+) True AMCG00001463
AMCG00001461 mRNA downstream 88012 4802172 ~ 4866884 (+) True AMCG00001461
AMCG00001462 mRNA downstream 154919 4869079 ~ 4870742 (+) True AMCG00001462
AMCG00001459 mRNA downstream 161988 4876148 ~ 4885603 (+) True AMCG00001459
AMCG00001460 mRNA downstream 200691 4914851 ~ 4939823 (+) True AMCG00001460
TU198750 other upstream 651605 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 833116 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 837622 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2712967 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 4124595 587975 ~ 589300 (+) True G157196
TU199079 other downstream 667530 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 883097 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 1156559 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1184075 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 1679943 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile