RNA id: TU198982


Basic Information

Item Value
RNA id TU198982
length 239
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G158014
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 4888114 ~ 4888352 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaggcaacaaaggagtggctcaaaatctatggagggagctgaaggttcgagttgccaaacgtcagtttcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgtgattgccaacaagggttttgccaccaagtactaagttgaaggggtcaaatacttatttccctca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU198941 lncRNA upstream 12970 4872695 ~ 4875144 (+) True G157985
TU198946 lncRNA upstream 12970 4872695 ~ 4875144 (+) False G157985
TU198925 lncRNA upstream 173954 4713895 ~ 4714160 (+) True G157975
TU198915 lncRNA upstream 185253 4696554 ~ 4702861 (+) True G157966
TU198914 lncRNA upstream 236114 4635364 ~ 4652000 (+) False AMCG00001457
TU199069 lncRNA downstream 424716 5313068 ~ 5315236 (+) True G158089
TU199073 lncRNA downstream 477653 5366005 ~ 5367069 (+) False AMCG00001480
TU199086 lncRNA downstream 533119 5421471 ~ 5423092 (+) True G158104
TU199168 lncRNA downstream 705328 5593680 ~ 5622676 (+) False AMCG00001486
TU199182 lncRNA downstream 819740 5708092 ~ 5734559 (+) True G158184
AMCG00001459 mRNA upstream 2511 4876148 ~ 4885603 (+) True AMCG00001459
AMCG00001462 mRNA upstream 17372 4869079 ~ 4870742 (+) True AMCG00001462
AMCG00001461 mRNA upstream 21230 4802172 ~ 4866884 (+) True AMCG00001461
AMCG00001463 mRNA upstream 108328 4770617 ~ 4779786 (+) True AMCG00001463
AMCG00001457 mRNA upstream 236167 4623467 ~ 4651947 (+) True AMCG00001457
AMCG00001460 mRNA downstream 26499 4914851 ~ 4939823 (+) True AMCG00001460
AMCG00001470 mRNA downstream 361022 5249374 ~ 5250444 (+) True AMCG00001470
AMCG00001480 mRNA downstream 478680 5367032 ~ 5382584 (+) False AMCG00001480
AMCG00001479 mRNA downstream 514873 5403225 ~ 5413536 (+) True AMCG00001479
AMCG00001478 mRNA downstream 577544 5465896 ~ 5468938 (+) True AMCG00001478
TU198750 other upstream 825824 4052997 ~ 4062290 (+) False AMCG00001430
TU198688 other upstream 1007335 3875209 ~ 3880779 (+) True G157781
TU198685 other upstream 1011841 3875209 ~ 3876273 (+) False G157781
TU198192 other upstream 2887186 1971881 ~ 2000928 (+) True G157369
TU197970 other upstream 4298814 587975 ~ 589300 (+) True G157196
TU199079 other downstream 493338 5381690 ~ 5383064 (+) True AMCG00001480
TU199165 other downstream 708905 5597257 ~ 5622676 (+) True AMCG00001486
TU199229 other downstream 982367 5870719 ~ 5871150 (+) False AMCG00001489
TU199235 other downstream 1009883 5898235 ~ 5900998 (+) True AMCG00001493
TU199345 other downstream 1505751 6394103 ~ 6395960 (+) True AMCG00001509

Expression Profile