RNA id: TU199470


Basic Information

Item Value
RNA id TU199470
length 1569
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G158435
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 6787404 ~ 6788972 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCGGAAATGTGCGTCGGGGTCAGCTTAGTGTTTGGACTCCAGCTGGGAAAGGGACCCATTGTTAAATTGACACCTGAACCGAGAGCTGCTGGAACACGATCCCCTCGCAGGTCCCTGGGAATATTCACACCGTGAGGCAGAGCACAGGAATAGAAGCACAAAGCGTGGAGGCAGTGGGGGCTGGCAACACCGAGCGCACACGGAGACGTCACGGCCTCATAGCGAGAGCCTGGCGAATGTGAAACAATATATGTGACACCTGCTTCCAATGCTGAACCCATTCCTTCATACCATGACATAATGTTCATTGTGTGACCCTGTGGCAGACACTCGGACTAAGGCCTGGACCGAAGCACAACTTTGTAGGGGAGAGTGGCATCTCGCAATACAGTTGGGTACAAGTTAGTGAGTTGGGGATTATGGGTAGGTTAAAGGTTTGGTATTGGCCTTGGACTTTGTTTGCAAGATGAGACATTTTCCCTTTGGTAATAGATTTGATGCAGTTATGAATTAACtcattttatgtatatgttCACCTATTTTCTCTATTAATCGccccccccacatacacacacaaaacacattttattctatTGGACTaagtaaatgaatacatgttaaatcaaaatgtatatgGAACTGTTTTTCAGATTCcaagaatacaaaaaaggaGTAAATTTACTTTAGTCTGGACACATTTGAACTGACTTCATTTATATTCTGAATAAATTGTAGTTTATGTTGTCACATCCCTAAACAGAGATGACTGTGTAATTGAAAACAGTAAGAACACAGTCAAATCCACCAAAGGGCTGCCAGATGACAGGACAGTGGCACACTTCTCGCTGTGGGGGTTTCTTTCAGCACACACAACCCCCTTGAGCAATGTCATAATCTCATACAGCAACTGTACCTCACAGCTCTGCTCTCTCCAGCCCACAGTCAGTTCAGTAGCAGACAGATTTTGTAACCTGATCCCCTGTCCTGGGTTCATCGAGGCGGGGGGTGGGCTTGGGGAACTGGCCACCAAAGTCTTTGGTGGCTGCCAGAGTTATTTTCCACTCCTGAAAAGTCTTCTAATCTGCATTTGGGAACCTGCCACATCTCATTAATCAGACTATTTGACCTTGAAGCTGTGCGGAAAGGGAAATCTCACCGCATCCCCCTGTGCCTGCTGTTTCTTTCCTGTCCCCGAAACTCAGTCGACTGAATGGGGCTCTGGAATCcagatgtatgacctcacttactgtacttacctgtgtaaattggaagttgtaaaatgtattatattttgaatggttctgtttaatgtaaatttgaatttgtaatgtttgatgcctttgtactgaactgtatttttgcactttgtattgcacttatgttgtaagtcaccctggataatggcgtctgccaagaaataatacaaaaaaaaaaaaaaaaaaaaaaaataataataataataataataatctggcaCTACTGCTCTCGATTCACTACCTGTTTTTGCCTCAACAAAAGTGCTTTTATGTTTCAGTGAACAGGATTTTGTGTTGAGCAGGTTTATGTGGG

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199387 lncRNA upstream 277774 6509294 ~ 6509630 (+) True G158364
TU199361 lncRNA upstream 365169 6422000 ~ 6422235 (+) True G158342
TU199355 lncRNA upstream 376847 6409021 ~ 6410557 (+) True G158337
TU199346 lncRNA upstream 389216 6396920 ~ 6398188 (+) True G158332
TU199234 lncRNA upstream 895158 5892046 ~ 5892246 (+) True G158230
TU199603 lncRNA downstream 239215 7028187 ~ 7036066 (+) True G158539
TU199613 lncRNA downstream 266876 7055848 ~ 7056061 (+) True G158548
TU199625 lncRNA downstream 369278 7158250 ~ 7160609 (+) True G158555
TU199643 lncRNA downstream 380561 7169533 ~ 7169767 (+) True G158571
TU199652 lncRNA downstream 523172 7312144 ~ 7313758 (+) True G158580
AMCG00001516 mRNA upstream 384 6779662 ~ 6787020 (+) True AMCG00001516
AMCG00001519 mRNA upstream 10718 6772496 ~ 6776686 (+) True AMCG00001519
AMCG00001518 mRNA upstream 16504 6753731 ~ 6770900 (+) True AMCG00001518
AMCG00001517 mRNA upstream 34511 6743705 ~ 6752893 (+) True AMCG00001517
AMCG00001515 mRNA upstream 45464 6736097 ~ 6741940 (+) True AMCG00001515
AMCG00001522 mRNA downstream 72219 6861191 ~ 6863384 (+) True AMCG00001522
AMCG00001528 mRNA downstream 82792 6871764 ~ 6874095 (+) True AMCG00001528
AMCG00001529 mRNA downstream 148375 6937347 ~ 6943146 (+) True AMCG00001529
AMCG00001531 mRNA downstream 211469 7000441 ~ 7010715 (+) True AMCG00001531
AMCG00001532 mRNA downstream 222933 7011905 ~ 7015337 (+) True AMCG00001532
TU199345 other upstream 391444 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 886406 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 916254 5870719 ~ 5871150 (+) False AMCG00001489
TU199165 other upstream 1164728 5597257 ~ 5622676 (+) True AMCG00001486
TU199079 other upstream 1404340 5381690 ~ 5383064 (+) True AMCG00001480
TU199525 other downstream 85796 6874768 ~ 6876578 (+) True G158478
TU199601 other downstream 234416 7023388 ~ 7028141 (+) True G158537
TU199730 other downstream 882342 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 882342 7671314 ~ 7679783 (+) False AMCG00001550
TU199779 other downstream 947543 7736515 ~ 7737890 (+) True G158672

Expression Profile