RNA id: TU199625


Basic Information

Item Value
RNA id TU199625
length 2054
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G158555
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7158250 ~ 7160609 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATGTTGATATTCTTCTGGACTGCAACTAAATAAAACACCGGAGTGAGTATAGAAAATCTGAAATACGAAACTGAAGGGAGGTTTAAATGAGACAAAAACGGAGCAGTGGAGGTCAGTGGAAAGCGTTTCACTCCAAGGTGTAACGAGATGGATTTAAAGGAGAAAAAGCTCCATCAGAAatccaaacacacaaaaaaaacaagaataaacaaTTGAATTCAAGGTCTGTGCGGTCTGTTCCATGAATCTACTTCTGGAACTGTAGGACAATGATTTTCTACCTCAAGGCAAGCCATTACTTATTGAATTGACTTCCTGAGCTCCTCTTTAAAGGTACGATTAGTTTAACTGCTAACAATTCATGGAGCATATTTTGAGCAGTCAAGGCATTGCAGTGAACTCTTGGgttttgggtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgcgtgcatgcatgtatgtatgtcatGCATCCATATGTATGTAGCTTGGCATACGACTGGGACAAATGTGGAAGGGCAGTGCCCATCCCCTGTCCGTCCTGCAACAATTCCAGGAGTGTAAAAGGCTTTCGATGGCAAGCTTCTGAAGACCTCAGCTTTTCAAGTTTGTAGCAAGTgccaaaaggaaaacaataaataaataaataacttaaaatactGGATCATCTGCCATCCGTTCAGATCAGTGGTCTGATTCTGACCCTCTCTCTGTTCCTTTTCATTAAAACTGACAATGCCTTCTGACAAAAAATgtaggaggaaaaaaacaactttcaacCCGTGTTTTTAGAGACAGcagacagcaaaaaaaaaaaaacagacatgcagCTCAGAGTACAAGGGATTGCCGGAATAAACTACAGTTCAAACCCCCTCAGAAGGCTATTACAATAACGTTAGCATGTTCTCCAATTTTTGCTTTCCATCCGACAGAAGCTCAAACTGATATACTTTATAcatactgaaatgtaaaaatcagtGCATTTATACATGTTCTTCACAGCCCCACTGAATATTTCAAAGGGGCTCCTAATTATATAAAGAAGAGGAAataaatccatttttttttttttttttttaggaattaAATGACAgaagcaattaatttaaaacacacccTTCCAAGGTCATAAATgcagaacaacaaaataattctaaaaaatatatataaaaagaaaattaaattagaaagaaaaaaaatcatgcatTTTCCATAGCTGTAATATTTACTTTTCCCACAGACTGAACCGAGAGTCtcagcgcagtctgtaaagtatttgatcaattacagtgtacagtaacagcaattcacattttaaatatacagtttggACTTCATGCAATGACAGATTCCATTTTCAAAAAGATCTCATTAGTCACTAGAGAAATCTACACAGCGTACTCATGATGATTGTAGTTTGTCTAGGGATGTGTTTACTAACTGTGGAACTACCCGTTTGtaaagaaaagggggaaaaaaaacgaGAATTGACAAATTATCTAAAACCCTCTCAGTTCAATTGAAAAAGGATCCTGTACATTGCATGAAAGTGTCTTTTCGTCTTTCATCAGTCAGGTTTCCTATCACACGTGAAAAATGTACAAGAAGAGCTGCAGTTGTAgttcaagaacaaaaaaatcttcCTTCTGGGGCTTGAATCGAAAAACACAGTAGAATTCACTTACtcatgttaaaatacagtagtgcaatatgtatatgcatctatacacatacatacatatatatgtttgtgtgtgtatatgcatctgtgtgtgtgtgtgtgtgtgtgtgtgtgtatatatatatatatacacagagaaggttgtctgagtgtgtgtttgtgtttatatacacacacacaaatatatattaatctcaGGAGATCAATGTTAATCTGAAATTGAATGACAATGTAAAAACTAcattaatgaatgaaaaacaagttttgtttatttctaagAAAAATCTAAGCTTTCCCTGCAACTCAaagggaataaataataaaaattattaaataataaaaaataaaaatcagcagTTTTATTTGCTA

Function

GO: NA

KEGG:

id description
ko05033 Nicotine addiction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199613 lncRNA upstream 102189 7055848 ~ 7056061 (+) True G158548
TU199603 lncRNA upstream 122184 7028187 ~ 7036066 (+) True G158539
TU199470 lncRNA upstream 369278 6787404 ~ 6788972 (+) True G158435
TU199387 lncRNA upstream 648620 6509294 ~ 6509630 (+) True G158364
TU199361 lncRNA upstream 736015 6422000 ~ 6422235 (+) True G158342
TU199643 lncRNA downstream 8924 7169533 ~ 7169767 (+) True G158571
TU199652 lncRNA downstream 151535 7312144 ~ 7313758 (+) True G158580
TU199706 lncRNA downstream 414305 7574914 ~ 7575132 (+) True G158621
TU199723 lncRNA downstream 500975 7661584 ~ 7664572 (+) True G158631
TU199773 lncRNA downstream 566941 7727550 ~ 7728815 (+) True G158667
AMCG00001542 mRNA upstream 25235 7112652 ~ 7133015 (+) True AMCG00001542
AMCG00001541 mRNA upstream 137432 7016929 ~ 7020818 (+) True AMCG00001541
AMCG00001532 mRNA upstream 142913 7011905 ~ 7015337 (+) True AMCG00001532
AMCG00001531 mRNA upstream 147535 7000441 ~ 7010715 (+) True AMCG00001531
AMCG00001529 mRNA upstream 215104 6937347 ~ 6943146 (+) True AMCG00001529
AMCG00001536 mRNA downstream 109809 7270418 ~ 7296604 (+) True AMCG00001536
AMCG00001535 mRNA downstream 139581 7300190 ~ 7305321 (+) True AMCG00001535
AMCG00001539 mRNA downstream 231464 7392073 ~ 7410053 (+) True AMCG00001539
AMCG00001540 mRNA downstream 261201 7421810 ~ 7452801 (+) True AMCG00001540
AMCG00001548 mRNA downstream 370337 7530946 ~ 7549993 (+) True AMCG00001548
TU199601 other upstream 130109 7023388 ~ 7028141 (+) True G158537
TU199525 other upstream 281672 6874768 ~ 6876578 (+) True G158478
TU199345 other upstream 762290 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 1257252 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 1287100 5870719 ~ 5871150 (+) False AMCG00001489
TU199730 other downstream 510705 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 510705 7671314 ~ 7679783 (+) False AMCG00001550
TU199779 other downstream 575906 7736515 ~ 7737890 (+) True G158672
TU199783 other downstream 586072 7746681 ~ 7746980 (+) True G158676
TU199853 other downstream 772547 7933156 ~ 7933555 (+) True G158725

Expression Profile