RNA id: TU199723


Basic Information

Item Value
RNA id TU199723
length 1511
lncRNA type inter_gene
GC content 0.42
exon number 3
gene id G158631
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7661584 ~ 7664572 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAAATACTGTGTTACAGTAGACATACACCCATGAGCAAAATGTTACATACTGTAGTACCGTGTGAGGTTGCCAAGGTGTTGGGCTCTTTAAACAGGCTGGCCTAGGGAGACAGACATACAAAGACAAAGACTATGGTGCAAAGGAGGCAATTTATGATTGACAGTGCCGGGTGATGGTGTAGAAAAACTGAACCAAAACCCTAGCTCTTTACCAAGCCAAACTATAATCTTCAGATCCCAGTCTATGTCAGGCAGGAGCAGACCAAATCAATATTCACATCCAAGTCCATACGCAAAGGTTTGAGGTCAGTATTCTTCACTTGGTGCAACAACCAACCCAAGCTCTGCTTCCTGGATTACGTCAGATGTATTCTCTTTGTCCTAAAACAGTCACTCCTCTGAATTCAATAGAAAAACGCATGGTATGCACAggggtgtgtatgtatgcatgcatgcatgtcaATGCACCACTATCTCTGCGGTTAGTGTCCTCCCAGGAGTTTGACCAGACTATCAACTTCCCACACAGAGACAGTTTCTCACTTGCAGCACCACACTGAAGAGAAATTAAATACTCAAGTACAGTTAAAATGGATTTATTGCCCAATTTTGTAGGGCAAATTAGTTAAGGATACAACATTACAGATTTCACAACACCCAGACTAGTATACACTTTTCAATAGGTTTTCtaatacttttaaaactttgaccTTGGAAAAACAGTTATTAACAAAAGTGCCTAGTCTGGGAAATTGATCAGACCTCAATCCACACATCAACAGCTCAATTAGGCTCCAGGCAGGACAGTATCCATTCTCAGAGCAGATTTTGAACGTCCAGACTGAAGTTTGAATTGCACAATGGTTGTCTTTACAAAGCAGGGTTTGGCAAGATATACAACACTAAAATTATAATACTAGGCTCTAAATCAAAACGCAGTTAActacatggggggggggggggggggggggggggtgaaactGGTATAGCATTTTTTGCATTCCATAGGGTAACAGGATACAGATATTTagaatgtttatttgaaataattattaggTTGCTTCACTTACAATAagaccacacacaaaaaaagccatCTTAACAGTGGGGATGCAGATCAATGCAGTATTGTTAAAGCAGTCATCCGTTTGCCTGGTCTTATTCACTTGCACATTTTCGTTGTTAGCCTGGTGTCAGGAAGCCAAGGACGGGACCACACTTCAAAGGTACAGGTGAGAGTCTGTAACCTTTGCAACTTTCTGTAAAGCGCACATCCCCAAATCTTTCACACTTCCCTTTTTGCAAGATGTGCAGCCTATCTTCACTGTGAAGGAGTACTTCATCCCTTCAACAACTGTTCCGTAGCATCAATGACATTAATCACTTTTCTGGCAAACGTGTCGATGCTGGCCTTGTTATACTCGGATACTGCGAATTTCAGAGCATTTTTGACTAGGGGGTCGGTAAGGTCTGCTTTCGTGACCCCCCCGGGCATAGAGCCTGCCAAANNN

Function

GO: NA

KEGG:

id description
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199706 lncRNA upstream 86452 7574914 ~ 7575132 (+) True G158621
TU199652 lncRNA upstream 347826 7312144 ~ 7313758 (+) True G158580
TU199643 lncRNA upstream 491817 7169533 ~ 7169767 (+) True G158571
TU199625 lncRNA upstream 500975 7158250 ~ 7160609 (+) True G158555
TU199613 lncRNA upstream 605523 7055848 ~ 7056061 (+) True G158548
TU199773 lncRNA downstream 62978 7727550 ~ 7728815 (+) True G158667
TU199774 lncRNA downstream 64981 7729553 ~ 7731701 (+) True G158668
TU199778 lncRNA downstream 70704 7735276 ~ 7735610 (+) True G158671
TU199780 lncRNA downstream 76054 7740626 ~ 7741056 (+) True G158673
TU199782 lncRNA downstream 78986 7743558 ~ 7744033 (+) True G158675
AMCG00001548 mRNA upstream 111591 7530946 ~ 7549993 (+) True AMCG00001548
AMCG00001540 mRNA upstream 208783 7421810 ~ 7452801 (+) True AMCG00001540
AMCG00001539 mRNA upstream 251531 7392073 ~ 7410053 (+) True AMCG00001539
AMCG00001535 mRNA upstream 356263 7300190 ~ 7305321 (+) True AMCG00001535
AMCG00001536 mRNA upstream 364980 7270418 ~ 7296604 (+) True AMCG00001536
AMCG00001550 mRNA downstream 11513 7676085 ~ 7679777 (+) False AMCG00001550
AMCG00001559 mRNA downstream 21812 7686384 ~ 7688398 (+) True AMCG00001559
AMCG00001558 mRNA downstream 31716 7696288 ~ 7710825 (+) True AMCG00001558
AMCG00001560 mRNA downstream 54222 7718794 ~ 7720111 (+) True AMCG00001560
AMCG00001556 mRNA downstream 110270 7774842 ~ 7792880 (+) True AMCG00001556
TU199601 other upstream 633443 7023388 ~ 7028141 (+) True G158537
TU199525 other upstream 785006 6874768 ~ 6876578 (+) True G158478
TU199345 other upstream 1265624 6394103 ~ 6395960 (+) True AMCG00001509
TU199235 other upstream 1760586 5898235 ~ 5900998 (+) True AMCG00001493
TU199229 other upstream 1790434 5870719 ~ 5871150 (+) False AMCG00001489
TU199730 other downstream 6742 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other downstream 6742 7671314 ~ 7679783 (+) False AMCG00001550
TU199779 other downstream 71943 7736515 ~ 7737890 (+) True G158672
TU199783 other downstream 82109 7746681 ~ 7746980 (+) True G158676
TU199853 other downstream 268584 7933156 ~ 7933555 (+) True G158725

Expression Profile