RNA id: TU199774


Basic Information

Item Value
RNA id TU199774
length 2053
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G158668
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7729553 ~ 7731701 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAGAAACAAGTGGCACAGATTTACACACtcatttacagaaaaaacaaccagTTTTTAAGCaaagtattttattgaaaattcTTAAACTCTACAAGTGATGTTATACATTCTAGACAATAGCAtcatccaaataaaaaaaaggacaaacataaaataaatatctgtggAAAAGAGCCAGTGATATAGGCAGGCAGTGTCCTCTCTCTTACCCCGTGCAGTGGAGCATCCCTTAGTGGTGGTAACCATGACAATGAGCAGCTACGCATCAGGGCGCAGGATGCTGCAATTATCACAGCATAACAACTTCAGTGTGGAGTGAGATTTGAAGAGAATCGGGGCTCCGCTGTTCTTCTGATTGAAACTCACTCCAGGGTGTGCTGTGAACCAGATGATGTCCCTCCGCTGAGAAGCCCTAGTGCAGACGCGTCTGAAACACTCCATGCTTGGAAGCAGTAATGAAATTACAGCCCCCCCCTCACAACATACATCGCCGAGGACTCAGTCCAGCGTGAAGCTGCAGCTGAGCAAAGCGTTCATAATCACGGGACATCTGCAGCCACAGCGCCTGCCAACGCAGCAGTCACATTGCACACAGAGCTGTCTCGTGTGCTCCTGTCCTGTCTCCTCACGGCAGAGATGGGCCTCTCTGAAGGTGAGCCGGAATGGAAAAAGCTGGACTTACAGCAAAGGCCTGTTTCTTTGTACTTGCACACTCAAATCTGAACAGGGCTGGGCCTTTAGTTGGGACAAAGCTTCTTGGTTACATatctgaaaaatgcattgtgtatgtaaatatatatttttgtgcatCTGTGTCTCTCCCTAAATGACTCCAGCCATTTTAAACCAAACATGTTAATATTACCATTAATATCTGTGCAGCCATATACCGACTGGATATCAACAAGGACAGGTTAGCCAGATTTCAAAACCATAGGCTTGCCATTTAACTGCAACTGGAAGAGTGTGGTGTGGGGAGgtcacagacacatgcacacgtATAGCACAATATTATATCCAAAAAGTAATGCTTTTAACTGAACATAGGCAACCTCTGCCATCTGGGTACATAttcacataaatcaataaacgaCTTGTGCTGGTATTAAAATTGTGGATGCATAATGGAATAACCTATAGTGCTAGTGCATTAAACACAGCAGGAATAAGTATATAAAGTGTAGATATACATGTTTCCACTTGACTCACTGAAACGAAGACTTCAGTAGGCAGaaattcatattatatatatatatatacatacatacatacacacacacacacatacatatgcgtgtgtgtgtgtatagtaaaATGAGCaaccctggaaaaaaaaaatgccttttgtttttttcttctcaaagcctgtgaaataaaaaatttccagacattttaaaatgtgaaggcTGCTTATTTATAAAAGGtgggtgtgtatgtatatttatatatacatgtacattttcatatatttattatatgaaaacatacacaCGCAAATACACTGAATTTCTGCTGAAAAGCCTTGAAATCACCCAGGAACCAGTCACACCCAGTCCTGCTGCCCCAGTTACATTTAGACTCAAAAGAATGTCTCAACACCCTACACAAAAATACTGTTCGTTTCATTTACAAATTACTGTATAACAGTACTGTGCTGCTGATGCTTCAttctatacaaaatatatgaatcagTAACAATATTTAATCTGTCAATAAGACACAGACAGTATACATATAAATCATCTGTCTTTGATTTGCTGAAAAAATATCTCCTCTGTTATATTCACGAGAAAGTGTTCCTTCATGTACTAGTTTTCTTCATTTCGGACACTCGTTTCCTTCTGTCCAGGAGAGTTTGTCCAAAGAGTTATGAGAGCGTGCTATCTTGTAACAGCTGTCACAATGCTACAGTTCACTGGTGAGCGAGCATATACAGGAGCCGGTGGAAGAACAGCCAAGATCCGCTCGATTTAAGCCAGGCTTCGCTGTCTTGGCTTGATTCTTGGATACAACtgttcaaatgaaaaaagaaaagaaaaaacattagtCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199773 lncRNA upstream 738 7727550 ~ 7728815 (+) True G158667
TU199723 lncRNA upstream 64981 7661584 ~ 7664572 (+) True G158631
TU199706 lncRNA upstream 154421 7574914 ~ 7575132 (+) True G158621
TU199652 lncRNA upstream 415795 7312144 ~ 7313758 (+) True G158580
TU199643 lncRNA upstream 559786 7169533 ~ 7169767 (+) True G158571
TU199778 lncRNA downstream 3575 7735276 ~ 7735610 (+) True G158671
TU199780 lncRNA downstream 8925 7740626 ~ 7741056 (+) True G158673
TU199782 lncRNA downstream 11857 7743558 ~ 7744033 (+) True G158675
TU199784 lncRNA downstream 20701 7752402 ~ 7752770 (+) True G158677
TU199836 lncRNA downstream 167742 7899443 ~ 7901353 (+) True G158713
AMCG00001560 mRNA upstream 9442 7718794 ~ 7720111 (+) True AMCG00001560
AMCG00001558 mRNA upstream 18728 7696288 ~ 7710825 (+) True AMCG00001558
AMCG00001559 mRNA upstream 41155 7686384 ~ 7688398 (+) True AMCG00001559
AMCG00001550 mRNA upstream 49776 7676085 ~ 7679777 (+) False AMCG00001550
AMCG00001548 mRNA upstream 179560 7530946 ~ 7549993 (+) True AMCG00001548
AMCG00001556 mRNA downstream 43141 7774842 ~ 7792880 (+) True AMCG00001556
AMCG00001571 mRNA downstream 122443 7854144 ~ 7859415 (+) True AMCG00001571
AMCG00001573 mRNA downstream 139452 7871153 ~ 7881358 (+) True AMCG00001573
AMCG00001572 mRNA downstream 151015 7882716 ~ 7895972 (+) True AMCG00001572
AMCG00001574 mRNA downstream 177497 7909198 ~ 7917326 (+) True AMCG00001574
TU199730 other upstream 49770 7671314 ~ 7679783 (+) True AMCG00001550
TU199732 other upstream 49770 7671314 ~ 7679783 (+) False AMCG00001550
TU199601 other upstream 701412 7023388 ~ 7028141 (+) True G158537
TU199525 other upstream 852975 6874768 ~ 6876578 (+) True G158478
TU199345 other upstream 1333593 6394103 ~ 6395960 (+) True AMCG00001509
TU199779 other downstream 4814 7736515 ~ 7737890 (+) True G158672
TU199783 other downstream 14980 7746681 ~ 7746980 (+) True G158676
TU199853 other downstream 201455 7933156 ~ 7933555 (+) True G158725
TU199983 other downstream 427445 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 2181607 9913308 ~ 9914664 (+) True G159174

Expression Profile