RNA id: TU199855


Basic Information

Item Value
RNA id TU199855
length 644
lncRNA type inter_gene
GC content 0.56
exon number 2
gene id G158727
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7933973 ~ 7934875 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTTCATCTTACCTGGATCCCAGTAGGAAGGTCCAGTGCCTCCCGATGAAGGCACAGATGTCTTCCTTCCACCTGAAGTAGCCCTGACGGCCGGTTCCTTCCAGTGACAGGTTGTACATGGCCAACATGACCACCTGCAAACACACATCACAGCAAGTCAGATAACACATCAAACCTTAACTTCGTCGGACCAATGGAGGACAATATATACACTGAAACAACCTGTTAATGACAATTCGTAGCAGCTGCTAAGAAATACTCATCCCCCACCACGTTTTTCAGACAGCAAGCCAGAGGCCTCTTGAATACCTGCTGCCAGGTATCCACTTGTGGCACTTGTCGCAGTAGAAGGACATCTCCTCCGTCCAGCTGGAGTCCCCCTCATCGCCGATGTCACTGTTGAGGGAGTCTCCGCTCTGGTCGTGGGAGAGATCCACTGAGGCCTGGTCCTCCGACTCCACGATCAGGAGCGTCTCGccctccacctccccctcctccagtcCCTCTGAGGCCGAGGTGCGTGTGGCCTCATCATCCACCCTCTGGCTGGAGAGGCCTCTCATCTCGCCGCCCCCATCCATCGTGAGGCAGGTCCCCGCTCAATACAGCCACTCAGGGTCAGCCACCACTGGGGAACGCCAATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199854 lncRNA upstream 115 7933658 ~ 7933858 (+) True G158726
TU199836 lncRNA upstream 32620 7899443 ~ 7901353 (+) True G158713
TU199784 lncRNA upstream 181203 7752402 ~ 7752770 (+) True G158677
TU199782 lncRNA upstream 189940 7743558 ~ 7744033 (+) True G158675
TU199780 lncRNA upstream 192917 7740626 ~ 7741056 (+) True G158673
TU199856 lncRNA downstream 199 7935074 ~ 7935289 (+) True G158728
TU199857 lncRNA downstream 1397 7936272 ~ 7936478 (+) True G158729
TU199909 lncRNA downstream 63035 7997910 ~ 7999712 (+) True G158771
TU199928 lncRNA downstream 100426 8035301 ~ 8038541 (+) True G158788
TU199968 lncRNA downstream 166576 8101451 ~ 8102415 (+) True G158823
AMCG00001576 mRNA upstream 5086 7923526 ~ 7928887 (+) True AMCG00001576
AMCG00001577 mRNA upstream 10479 7922768 ~ 7923494 (+) True AMCG00001577
AMCG00001574 mRNA upstream 16647 7909198 ~ 7917326 (+) True AMCG00001574
AMCG00001572 mRNA upstream 38001 7882716 ~ 7895972 (+) True AMCG00001572
AMCG00001573 mRNA upstream 52615 7871153 ~ 7881358 (+) True AMCG00001573
AMCG00001575 mRNA downstream 5259 7940134 ~ 7962377 (+) True AMCG00001575
AMCG00001567 mRNA downstream 41212 7976087 ~ 7995881 (+) True AMCG00001567
AMCG00001568 mRNA downstream 71560 8006435 ~ 8017420 (+) True AMCG00001568
AMCG00001591 mRNA downstream 118608 8053483 ~ 8094300 (+) True AMCG00001591
AMCG00001592 mRNA downstream 159757 8094632 ~ 8099017 (+) True AMCG00001592
TU199853 other upstream 418 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 186993 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 196083 7736515 ~ 7737890 (+) True G158672
TU199730 other upstream 254190 7671314 ~ 7679783 (+) True AMCG00001550
TU199983 other downstream 224271 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 1978433 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 4395113 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 6334740 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 7396745 15331620 ~ 15334567 (+) False AMCG00001760

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041602 True 707 mRNA 0.52 3 NC_007133.7 25074074 ~ 25078718 (-)