RNA id: TU199857



Basic Information


Item Value
RNA id TU199857
length 207
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G158729
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 7936272 ~ 7936478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCTCGATCCAGGCTTTGTTTGATGTGCACTCCCGCCACGGTCCCCAGTGTTAGAGCCAGAGAAACGCCAAGTACTACCTTTGAGGTCGTAGACATAGCTACAGAATGACACTTGAAAAAGAACAAGATCTTAAATGCATCTTATCTCACAAAGCTATACCAATGTGTTTATGGTGCAGACCTCACTAGTCAAATCCAGAGCACTGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU199856 lncRNA upstream 983 7935074 ~ 7935289 (+) True G158728
TU199855 lncRNA upstream 1397 7933973 ~ 7934875 (+) True G158727
TU199854 lncRNA upstream 2414 7933658 ~ 7933858 (+) True G158726
TU199836 lncRNA upstream 34919 7899443 ~ 7901353 (+) True G158713
TU199784 lncRNA upstream 183502 7752402 ~ 7752770 (+) True G158677
TU199909 lncRNA downstream 61432 7997910 ~ 7999712 (+) True G158771
TU199928 lncRNA downstream 98823 8035301 ~ 8038541 (+) True G158788
TU199968 lncRNA downstream 164973 8101451 ~ 8102415 (+) True G158823
TU199985 lncRNA downstream 229295 8165773 ~ 8257189 (+) True G158837
TU200005 lncRNA downstream 366072 8302550 ~ 8304840 (+) True G158857
AMCG00001576 mRNA upstream 7385 7923526 ~ 7928887 (+) True AMCG00001576
AMCG00001577 mRNA upstream 12778 7922768 ~ 7923494 (+) True AMCG00001577
AMCG00001574 mRNA upstream 18946 7909198 ~ 7917326 (+) True AMCG00001574
AMCG00001572 mRNA upstream 40300 7882716 ~ 7895972 (+) True AMCG00001572
AMCG00001573 mRNA upstream 54914 7871153 ~ 7881358 (+) True AMCG00001573
AMCG00001575 mRNA downstream 3656 7940134 ~ 7962377 (+) True AMCG00001575
AMCG00001567 mRNA downstream 39609 7976087 ~ 7995881 (+) True AMCG00001567
AMCG00001568 mRNA downstream 69957 8006435 ~ 8017420 (+) True AMCG00001568
AMCG00001591 mRNA downstream 117005 8053483 ~ 8094300 (+) True AMCG00001591
AMCG00001592 mRNA downstream 158154 8094632 ~ 8099017 (+) True AMCG00001592
TU199853 other upstream 2717 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 189292 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 198382 7736515 ~ 7737890 (+) True G158672
TU199730 other upstream 256489 7671314 ~ 7679783 (+) True AMCG00001550
TU199983 other downstream 222668 8159146 ~ 8161815 (+) True G158836
TU200393 other downstream 1976830 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 4393510 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 6333137 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 7395142 15331620 ~ 15334567 (+) False AMCG00001760

Expression Profile