RNA id: TU199985


Basic Information

Item Value
RNA id TU199985
length 2838
lncRNA type sense_over
GC content 0.37
exon number 2
gene id G158837
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 8165773 ~ 8257189 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTAAACCAaacgtattttattttacaaaatgtatagaaaactACATTCTTCCCTTCagatgttacttttttttatcacttAAAAGCTCTTTAATAACGTATATACTGCTGACATGCAAGACAAAACAGCAATTTTACCTTATCGTGTTATACATTTCCAGGCACTGGTATTAGAGAAAGGGAATCCGATTTCCATTTGATTTGTGGCAGTGTATCGATATTAGGTACATGCTGGTTTAGTCCCGTTGTCAGCAGTGTCATACAGATAATGTAATAGTAACATGGTCATATTGCAATACTGACCCACAGTACTAGGTATGAGTTTGAAAAGTTTCAGACAAGTTTTCAGCTATCTATGGTTGATCCAACTCACTCCAACAAAAGAGGAATTCTTATTTTCCCTCTGTCTGGGGTTACAGCTGCTGAAGCTTACATTACATTAGCTCTTTTACAACACGTTTAACTTTGtagacatttaaaagaaaacgaCAGTACATTGTGTTGGCactacacatgcacacactaaAAATATGATATTGCTTAGTTCAATTAGCAGTTTCTTGAAAAGAACAAGTGTGGTGGTTTATTTCTGCCAACTCATGTGGGCAACAGACTGACCCAGACAGAAGTGCTTTCAATGAGGTCTCTGTAACCATTTGtgcaaaaaaaacatgccactTGAGAAAACAAGTTTACAAATGTACTTCTGTACGCCATGACTAAAGAAAATAGTCGAGTGGAACAAGAAATAAGAGcgtattttaaacacaaacctaCCTACACCGAGGACAGTTTTTACAGCAATGTGAAGTTCATTTTCACATGAACAACTACTGTTTCAACAAAAATACAGACCCCGAAACGCAACTGAATGACTAGACATAGAACCAATAACTCTAAAGGTAACAGAAAGAACGAGTGAACGCTAGGTCTGTAATGCAGTTGGTGACCCTGATGACTTAGGGCCAAATCACTGCAGGTTTCATAGTTAGATTACATCCGAGGTTACCAACCCAGTCCATTACAGCCTGGATGAAGGTTGACAATCATTAGACGAGTTAATGGGTTCAGTTCAGCGGGAAGACTGCAGACTCGGCAGATATGGGCTCCTTTGGGGGCAAGGGCTAGGAACCACTGTTTTAGATCAATATAACTGGGAAACAATTCTTAAAAGGCTCAAATTTTGCAAATAATTGGCTAAATTAAGTAATGGAGAGCTCGGCTAGATTGAGAACCAGAAACCCTTTGCAGAGCTCCAGGTCCCGCTCTTTTAACGTTCGTTGTTCTAGCAAGTAATACAAATGACTAATCTCAGAGTATTTTAATGAAGTTCAAAACAAGTGGCAAAACTTATAACTAACTTACTAATTGACAAAAAGGTTGACTTGCATCTATAATTTAATGACTGTTTTAgttaaacatttgcaaaaaaaacaccaaaaaaaaaaaaaaccccacaAAGAAAGGTTGTAGATAAGTGCTGATATTCTGAAAACATCCTTGACTGAGGAGGCAATTagttaaaatagattaaaaaggAAAGCGAAACAGACCAAGACCACTCCACTTATGATCTCTCCCGGATAAACACAATTCATGTAGTTATTGTTGTTGCATTAGTTAATTTTTCTGGTTCTTTTTGATACTCAGCTCATAATGAAGACGCAGATATAAAAGTTTTGATTGTACATTAAAGAACCACAgcattttagctttttttgaGTGCTGCGCCgttagaaatagaaatggttcaAAGGGAGAATTCCCCCGACACTTTTTTTCCTGGCCAGTGTGCATCGATAATGAGGAAATCTAAAAGTACCTGAACTGTTGCCATCATCTCAAACGCTTCTTCTAAACATATTTATAGAGCTACGTTCAGGAATACTTCTCTGCTTTCAACTGCGATTCAAATCAGAACCCTTTAAAGATAAAATATTCATTCCTCGTCGGGAAAGCGAAAAGAAAAAGAGCTTCAGAGACAGGATTTACACAGAATGTTCgtgtctttaaaatgaattattcagTGGAGACAACTTTTGTAGCGCTTTAAAGCTAGTTGTTAAGCTAGCATGTAACTGTAGCCCAGTTTATGCCTTGGCAGTTCAATCTAGAAATGAAAGTCAGTGCTAAACATCTGGTTATCTCATTTTCAGATGCAGTTATTTGTGAAGGCCGCTGTCTCTCCAGGATAACCTGCAATGTAAGTTTTGTGTTTGGCCTGATCGCTTCCCTTGACCATCTAAGCCATAAATAGATTATacctttgttgttttcattgagctgagctttttttttataaaggtattaaagtaatatatacacagataacaaaacaaaatccacttacaatcagtacaaatattaaaagcagTAATACTGGCAACgtaaataatacacacatttatacaaatattaagaaTAAGTGTTTGAAACCCCTGGGCAGTATCAAAATCTGGTATTGTTCACCCATTTTGTGAAAAGTTTATTGCTTTTGATACGATTGTTTTTACTTGAGTGCGACATCAAACTGGactttaaatcaaaacacagagGGGGAGAAGCAGTAGTACTCGGCAGCGTGTGGAAGAATTGCAGCGACAAACCTTTTGTGTTGAGTAAAACCTGATTGCAAGTTACCCAGTATGTAGTTGTAAATCTTTTCATGATCTGTATGGGAGAGAGTTCTTGATGCAAGTCTTCAGTGATTTGGTACAGTTCGTTCCTATGTCTATTCCCTCCTTCAGGACAGTAACCATACACCAGGTGGGGCTGAGAAACGTGCTCCAGAATCGCGATATGGTGGGGAATCCaggtggtttttttttTTGTTTTCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU199968 lncRNA upstream 63358 8101451 ~ 8102415 (+) True G158823
TU199928 lncRNA upstream 127232 8035301 ~ 8038541 (+) True G158788
TU199909 lncRNA upstream 166061 7997910 ~ 7999712 (+) True G158771
TU199857 lncRNA upstream 229295 7936272 ~ 7936478 (+) True G158729
TU199856 lncRNA upstream 230484 7935074 ~ 7935289 (+) True G158728
TU200005 lncRNA downstream 45361 8302550 ~ 8304840 (+) True G158857
TU200229 lncRNA downstream 519748 8776937 ~ 8777745 (+) True G159041
TU200303 lncRNA downstream 952931 9210120 ~ 9214347 (+) True G159101
TU200359 lncRNA downstream 1058922 9316111 ~ 9369910 (+) True G159142
TU200389 lncRNA downstream 1605771 9862960 ~ 9863228 (+) True G159170
AMCG00001589 mRNA upstream 11563 8150133 ~ 8154210 (+) True AMCG00001589
AMCG00001590 mRNA upstream 21891 8124004 ~ 8143882 (+) True AMCG00001590
AMCG00001592 mRNA upstream 66756 8094632 ~ 8099017 (+) True AMCG00001592
AMCG00001591 mRNA upstream 71473 8053483 ~ 8094300 (+) True AMCG00001591
AMCG00001568 mRNA upstream 148353 8006435 ~ 8017420 (+) True AMCG00001568
AMCG00001587 mRNA downstream 16475 8273664 ~ 8302470 (+) True AMCG00001587
AMCG00001586 mRNA downstream 48676 8305865 ~ 8309732 (+) True AMCG00001586
AMCG00001588 mRNA downstream 54338 8311527 ~ 8315352 (+) True AMCG00001588
AMCG00001585 mRNA downstream 117096 8374285 ~ 8377410 (+) True AMCG00001585
AMCG00001600 mRNA downstream 284174 8541363 ~ 8567956 (+) True AMCG00001600
TU199983 other upstream 3958 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 232218 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 418793 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 427883 7736515 ~ 7737890 (+) True G158672
TU199730 other upstream 485990 7671314 ~ 7679783 (+) True AMCG00001550
TU200393 other downstream 1656119 9913308 ~ 9914664 (+) True G159174
TU201065 other downstream 4072799 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 6012426 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 7074431 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 7175148 15432337 ~ 15439031 (+) True AMCG00001762

Expression Profile