RNA id: TU200477


Basic Information

Item Value
RNA id TU200477
length 3271
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G159250
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10315061 ~ 10319144 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tattttaaaatacattttaataaagaatgATTTTCAAAAAGTGAGGCACTATTACTGTCAGGTACATCTGAATATAAACTGCTTATATAACTTAATGTAACACATTATGTGGTTCCTTTTTACTCTTCCTTGGTGCTTTCATAATAGTGCAAATatgtacaaacaaatacaggacAGGACATAGAAATGACTTGATGTACAGTTGCTCGACACAGCACAGCTACAACAAATATCTTGCAGGACCCCAAAACATTCACTCGCCTAACTATTTTGCTTAATGTAACCCAGGGGAGCAAAAACATTGCAGGATCATCATTACTTTGACTTGCAATGAATTACTGATTACAGTAACAAGAATAGACCTGTAACCTCCACAGCAGGTGTACTTGATAGACAAGCGCACTGGTCCAGGAAGACACTACTCACTCTATAGGGCATTTCTAGGACATGCAAGACCAAATGGACTTCTGTAACTACTAATCAGACCAGGAAACCAAAATAATATGCTAGCAGATCATGCAAAGTCAACACTTCGGAGAATCAAGGCTTCCAAGCTTTTAACTCACCattaggagagagagaaaaaaagtttaagCAGATGATTGAATATGGACTTAACCAAATATTTTCTCAGCACTATCATTTTGATGACATCGTAAAGTTCTGCATGGTTTCTAAATAATTTAACCATGATAATTGTCTTACAGGCAGTGAAGTACATACGTTTTAAGTGCTCCATAAGGTTCTGCATTGTACATAATACTTAGTGTCCCAGTAGACTTTTGAATTCACTACAGTGAGAGAACTGTATTTAGGATGTGTGGGGTTATTTTTAACTCTGGGAATTTCTTGATTCTGGGCTTTTGAATGGCAGCTTTTGTGGCAAGCTTTTGATGTAACAGTTAATTTTTAATCGCTAGTCAAagcttttaatataaaaaaaataaaaataaagtaggggggaaaaatattttagaagGGCAATACAAGATTTTGCATTCCTTAAATAGAACGAAACACAATGTCTcattacacaaattaaacaatcttAATGTAGTGTTTCAACTCTAGAAGCTACAAACCAGAGAAACTACGTCTTAATTTTGAACTGCAGTTTAAAACtttatccttaaaaaaaacactctggTTGAAGCCCATtagcagattaaaaaataagtaaagactgtaaaattgtaatttagtcTGAAATCAGCAGCAAGCAACAGTCAAACTCTGCAGAAGTCAAACTCTGCAGTTAACCGACACTGTCTTTGGGCATTTCAGAAACCTTTCGAAGCTCCAGAAATGTCTCAGTTTGTACGCGCTCCTCCAGAGAGGCCTTGCTGGTAGCATTCACGTCGAAGCGCCATTCTTCTGAGAGGCCTGCATCCATAACCTCCTGCGGGCCATCGCTTCTTGTTTCTTCCTTTCAATCTCTTCTTTAGAACACTTAACAGTCTTTTCATTggagagaaaaacTTGTTTGTCAGCGCCACAGGGTCGGACAGATGTCTTTTGAAGGAAAACTTATGAGAAGCTTCAAGGATTCTTGCCGATGTTTGTGATGGGACGGTCCTGTTGCTAAAGTCCTGTATATAGCCTGTGCCCTTCTGGATTGTATTCTTCGTAGTTTGTAATCCTATCATTAGACTCTCGTGATCTTTTTTACTCACATTTGAAATGTTCGTTTTTTGCGTCAATGACCCAGCCACATATGCAGCAGGTTTTCCACAGCTTGAGGTGGCAGTATTTACAATAGGACTATTGGCTGGTAAAGAATAGGATCGGTTGAATGCAGTTGGGggcttattttttatattctcCAGGCGTTTGCATTGGTTACTGCTGTGAGTGACTGCATGGAAACTTTGAGCACTACTTAGAGCTCTACTCATGCCAATAGCTGGGACAGACTCCAAGACAGGGTTCGGGAGATGTGTTTTTGTCAGGGTAGATGCAACATTTGTTCTCAACCCCACTCCTTGACTTTGAGAAATCTTTTCCACATCATCACATGCTTGATATAGCAAGTCATCATCACTTCCATCGTCCCACAGAGGGTCAGAGTCAAAAAAAGAGTCCATATCAACACTGCTCTCAGCTGTGCTCTCAACTGGCTGTTGGGCAGTTGAGGGCTTTGTCGTGCCTGAAGATACTGAACTTTGCGGAACAAAGGGTTTGTATGGTCGGGGTTCTACTTTTCCACTGTGAATTTTCTGTGAGGCGTGTATATGTGTAGCAGATCCTGGAGGCTTGTTTTTGTCACCGAGACTTGTTCCAACAAGAGGTGCAGAATGATGATGCATGACTTTTTGTTGAGCAGGTTTAGTCCCTCCAAAATTGCTACACTGCTTGGATGCATCTCCTGAGACAAACTGAGGGTTTGCATCCAGCGTGAAAGTACttctgttttttgctttttcatttttgcctTGGAATGCATTTGTCACAAGATTGCTCCTGGTTTGCAGGGACTTTCCACAAGCTGTCACAGTAAGAGATGCAGAAGATGAACCACTGGCAACGCCTGCAGTTTTTGCTTGAACAAATCCCATTTCATTAGACAAGTGCTGGGCTTGTTTTGGAGCAGCGATAATGTTTGGATTTTGCATAATTTCAAGCACAAAAGAGTCATCTAGCAAATCATCACTACCCCAGTCATCATCAAAATCGTTATTTGATGCTACAGGCTTAGCAGGTGCTACTGGGTTGTTTGCATGCAACTCTAGTGaagagatgtttttattttttgcaggaAGCGCCTGGTAAGGATTATTTTCTGGAGGTTTACTGAACTTCAGATCATCTCCCTTTTCACAAACACTTTTGGCTGCAGGTTTTGTCATTTCAGCTCCTTCTCTTGAGTTTCCTGCTTCCTGGGAATTATTCGAAGAGCCCTGACTCAGTCTTCCACTGAGGTACTGAGTAGGTCCATCAAAAAGAGCATCCATGTCGTCGTCCGCCTCTAGATCAACAGGTCTGTTGTTGGAAGGGTTAATACTGACCTCTTCCAATACACCAGGAtctgtgactttgaaagagctgACGCTGCTTGTTCTAGCATCTTCACTCACAGAAAGAGGACGATCGTTTTGCTCACTCTCGTCCACAAGGGCCTGTTTCATGTTTGTATTCTGAAGTTCACTGCTTTGTTCCTTATCTTGTTGGATCATATTGATATCAAACTGCTTTGCGAGCTTCATAAGGTCCTCCACTCCATTTTGCcgactAGATTTCTTCTTCACTCTAGTGTGCTGTACCTCAGGAGTGC

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0005248 voltage-gated sodium channel activity molecular_function
GO:0005272 sodium channel activity molecular_function

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200444 lncRNA upstream 155243 10157734 ~ 10159818 (+) False AMCG00001630
TU200427 lncRNA upstream 244727 10069930 ~ 10070334 (+) True G159204
TU200388 lncRNA upstream 445458 9869168 ~ 9869603 (+) True G159169
TU200389 lncRNA upstream 451833 9862960 ~ 9863228 (+) True G159170
TU200359 lncRNA upstream 945151 9316111 ~ 9369910 (+) True G159142
TU200504 lncRNA downstream 122803 10441947 ~ 10448746 (+) True G159273
TU200526 lncRNA downstream 350032 10669176 ~ 10677854 (+) False AMCG00001643
TU200532 lncRNA downstream 365638 10684782 ~ 10687436 (+) True G159294
TU200579 lncRNA downstream 428345 10747489 ~ 10757822 (+) False AMCG00001645
TU200582 lncRNA downstream 428345 10747489 ~ 10755130 (+) False AMCG00001645
AMCG00001639 mRNA upstream 88979 10222565 ~ 10226082 (+) True AMCG00001639
AMCG00001640 mRNA upstream 102987 10208776 ~ 10212074 (+) True AMCG00001640
AMCG00001641 mRNA upstream 113126 10199198 ~ 10201935 (+) True AMCG00001641
AMCG00001632 mRNA upstream 137163 10174132 ~ 10177898 (+) True AMCG00001632
AMCG00001630 mRNA upstream 155235 10157745 ~ 10159826 (+) True AMCG00001630
AMCG00001643 mRNA downstream 336043 10655187 ~ 10669909 (+) True AMCG00001643
AMCG00001646 mRNA downstream 375822 10694966 ~ 10705277 (+) True AMCG00001646
AMCG00001644 mRNA downstream 390729 10709873 ~ 10717682 (+) True AMCG00001644
AMCG00001645 mRNA downstream 428527 10747671 ~ 10757858 (+) False AMCG00001645
AMCG00001657 mRNA downstream 477584 10796728 ~ 10797750 (+) True AMCG00001657
TU200393 other upstream 400397 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 2153246 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 2381506 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 2568081 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 2577171 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 2010844 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 3950471 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 5012476 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 5113193 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 5918118 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile