RNA id: TU200504


Basic Information

Item Value
RNA id TU200504
length 2655
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G159273
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10441947 ~ 10448746 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atttatttatttacaacgTATACATAAACTCTCCAAGAGGGGACAATGGAAAGCAAAAACACGCACATGACTGATGTCctgttcagaaaaaaacaaaagaaagtagttggttaattaattttgtttcattttaggATTACATCACAACCCATttggtgatttgttttcatggGGAGATGAATTCACTGATGCAATAATTAAACTCACACACCTTTTGGTTTCTATGTTTGTTCCTACCAGTCTCCTTAAGACATTGCCAGCAATAGCTGATTAATCATAGTAGATGTCGATAGCTTTTCCCATCCTTCCCTGTTTACATCTGTTCAGGCCAATTCAAATATGGTGAGTAAGTGAATTAGACATGCAAATGCAAGCCTCGGGCTAGAGAGATAGAGAACATGGATGAAATCCTGGGATGGACGAGAGTCTTCCGCCTGACATAGTTATTTTAATGCTCTAAAAATCCTGCAAATAAGCCTTTTCTGTCATTTGCAGAGTAAACGTAAGGCTtcgtcattttttttcttttttcttcaaacGTAAGGAGATTTGGGGAAGAAGCCAAACTCTATGgaaatgacacacacatagtgtggagaaaaaaagttcacatcctcttaaaaaaaatctataagaAACAACAGAATATGCAGAACAGTACGATagcatttacaataattaattctCAGTTCTCGCGAGAGTCCAACGTAATTTTACAACAATATTCAGCATGTCCTCCTTCTCCCAGGAgttgatatatttataatttcattCTCTCTTTTTCCAGGGCACTTCCTGTGAAAAGGGTCCCAGGGATAAAAACATTGGCTTCTCCTTGGTCCAGATTCGATGCCAAGAATGGAGCTCCTTGAAGTCACTGCATGAAGTCAATATATGAGCAATGCCACCGCTGCAGGAACagGGTCCCAGAGGTAGAGTACCCTCCTGTGAGACCCAGTGACACCAGTCCGAGGTGGAATCAAAGAGTAGAAGGCAAGAGCGCTAAAGTGCAGTGAGTGAAAGATGTGATGTGATGGACTACCTGTAGTGTGCGTGAGTGTGGAGCCCTACAGTGCAACTGGGGGGAAGGAGGGCAGACAACCCAAGGCCTTACCAGGTGGTCTAATTCCCATGTGCTGCTGGCCATCCATGACAAACCCTCCCATCGGCTGACCGTCTGGATTGTAGGGTGCTCCTTGACTTACTGGAAGGGGCATGGGACAGCCGTTaattaatggtttaattaatgtTCACCCTCAATAGCTGGACAAGATAAGCTCCTCTTCTGGGTTTGTTCTGAGGACGTTTTTTGCCCTTTGGTTTAAATGATGATTGGCAGctaataaaaatgcaagatCGTATGACAGTgacaaatcacaaatcacagAATCGAGAAAATACCCTGAGGCTGGACTCAAACGCCCCAAAGATTTATATGAGTTGACTGAGACTAAAAAAATTAGAAGAACCCCAAGTTATTCAAATATGAGGTTTGTCACTTAGTGTTTGAATGTAGTTCTGACTACATTATTAAAagcactaaaaacaaaacattaaacccAGAAAATATTTTGGCGGATATTAAAAACACCATCAAGAGATTGCGTTCCATCACCAATAGCCCCGCCATCCAGCATTTTCCCATCCCATAAAAATAAGCTTACTCCAGAAATGCGCTGCTTTGGGTTATTCAAGCAAAAAAACAGTTCTACCTCCCCGAATGCCTTTGAACTTTACTGAGTCCCTAATGCAATGCTGACCCCTTTGCCCCTCTGACAGGTAATAAAGTTTACAGCAGTCCACACCAAGCCGTGCACCAGGGAGTGGTCATTGCAGCACAGAGTAAAAAAGCTGGGAAGCAAAATTCATAAAActcacattcatgtttttatttttttcctttttcttcatttgtttcagatttatttGAGGAAAAAGGAAACGGCTGAACATGGTGGAGCTAaagaagttatttaatttggttgtgttttaatttcactataggatttttttaatttttaattttaaagtcaaGTCAAAATGATTAGTCTTGTTATTTATTGGATGGATTTTAGTTGTCATACACTCCCAGCATCCATTGGTAGTTTATTTACCAGGTAGCAGACCTCCAGGTGAATGGCTTGAGGACGCTTTTCGCCTGCGAGACTTGAATACAGTTACTATTGGGGACTTGCCTGCTCGATTGGACTGGTCTATCATGGGCTGCACTATTCTCCTTCTTGCATTAATGAACCTGAAAGAAAGCAACAacagtggaaaagaaaaaaaaatcctgtcaaTTAGAGCTGCAGAATTACAGAACTGTGCATATGATTACACGTCCACAAACAAaaaggtgttgtttttttttttgtgacaatACTGAACAAATACACGCTGCAGCCTGCAAGCATGCCCCACAAGGCAACACAAAGCCTCTGTCAGCACATTTCTTTACACTGTCCAGACTCCTCCACTGGACCTCCAGAAGAGAGAGAATgcaaagatctttttttttttttgccatacTTTTCAAGAAAGAGTGGGTGAGGTTATAGCATTAAAGAGGTCTGAAACATGGATGTGTAGGATGAAACCTTGACTTTTGTTCTATTCTCCATTACCTGCTAGTACAAACCCATCCTTGTGTAAAat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200477 lncRNA upstream 122803 10315061 ~ 10319144 (+) True G159250
TU200444 lncRNA upstream 282129 10157734 ~ 10159818 (+) False AMCG00001630
TU200427 lncRNA upstream 371613 10069930 ~ 10070334 (+) True G159204
TU200388 lncRNA upstream 572344 9869168 ~ 9869603 (+) True G159169
TU200389 lncRNA upstream 578719 9862960 ~ 9863228 (+) True G159170
TU200526 lncRNA downstream 220430 10669176 ~ 10677854 (+) False AMCG00001643
TU200532 lncRNA downstream 236036 10684782 ~ 10687436 (+) True G159294
TU200579 lncRNA downstream 298743 10747489 ~ 10757822 (+) False AMCG00001645
TU200582 lncRNA downstream 298743 10747489 ~ 10755130 (+) False AMCG00001645
TU200580 lncRNA downstream 307388 10756134 ~ 10757822 (+) True AMCG00001645
AMCG00001639 mRNA upstream 215865 10222565 ~ 10226082 (+) True AMCG00001639
AMCG00001640 mRNA upstream 229873 10208776 ~ 10212074 (+) True AMCG00001640
AMCG00001641 mRNA upstream 240012 10199198 ~ 10201935 (+) True AMCG00001641
AMCG00001632 mRNA upstream 264049 10174132 ~ 10177898 (+) True AMCG00001632
AMCG00001630 mRNA upstream 282121 10157745 ~ 10159826 (+) True AMCG00001630
AMCG00001643 mRNA downstream 206441 10655187 ~ 10669909 (+) True AMCG00001643
AMCG00001646 mRNA downstream 246220 10694966 ~ 10705277 (+) True AMCG00001646
AMCG00001644 mRNA downstream 261127 10709873 ~ 10717682 (+) True AMCG00001644
AMCG00001645 mRNA downstream 298925 10747671 ~ 10757858 (+) False AMCG00001645
AMCG00001657 mRNA downstream 347982 10796728 ~ 10797750 (+) True AMCG00001657
TU200393 other upstream 527283 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 2280132 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 2508392 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 2694967 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 2704057 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 1881242 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 3820869 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 4882874 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4983591 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 5788516 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile