RNA id: TU200623


Basic Information

Item Value
RNA id TU200623
length 2738
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G159356
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 10841097 ~ 10843834 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaagGGAACATTCAAACTGGAAATAACACAATTACTGGAATGACTTAATCCAAAAGAAAACACTAGCTTTCACAAAGCCAAATgggcagtttatttaaaatgtctaaaaataaatagctgtcATGGCATCTCTGAAAACGCAGCCAATTCAGGACTTACTTTCTcacagaataaaagtaaaaagagCATATTTACAAACACTTTGTACAGTAAGCATGCTGACTGCATATCAGTATCTGGTAACTTTAGGCATCATCAGTTAGTTAGTGTTAGGACTTATACCAGATctttaaggaaacaaaatgaatacatattacacttcttaataacaattaaaaaatgccaaGGAGCATTTCTTCAAACTAATGATTATGCTACGCCATGTATTTGGTCTTGCACTTACACTTAGATTTGGAAAAGGtgcttttgtttataatttccTCCACAAATGATTGAAACGTTGGTTCAGAAAGTGCTTTTTTGATATATAAGTCAATTGGTGAGAGTATTCTTCAATAGACCTTCCCCTATTTGAAAAGTCTAGCTGTCATTTGCATGCTTACATTATATGTAGTGAAAGTATGAAAATAATCAGTGACAGCTTTTAAAATTTCATAACAGGCCTTCTatgaacagtaaaaaaaaaaaaaaacatgattgtaCATACATTACTTTTTCAACTTAGCACAGATATATCCTCTGTATCAAGGAATACTATAAGGTACATAGTTTTAGCTTAATAAAATCACCAACAACTCTAATAGTCCACATCAAAGGCCTGATTTTTAAGTTCTTACTGCAGTGAAGTAGTACATTCTAATTTGAGGGAAGTAATTACTTTCTTCCATTAACAAATGCACTCAGAAAAgtggtttacatttttacacCACTTGAGGTAAATGTCCAATACCATTTTCAtcgtaataaaaaatatatatgagcAATTCCGATACCTACTATTACTCAAATTGACCAGAACTGCTAAAACTTGTCAAATCAGGCCTTTACATATACAAGATACATCAAACCGACAGACAAAGCCAAAACTTGGTTACAATCAGGAACAATGACATTCGTTTGAACTGATCAAGTACATTTCTAAAGGCCCTTTTTTTAGTTTAagtaacagtacagtattgATTTGAAGAGAACAAAAGCATGCTTTATAGAAACTGAAATCTCTGAATTTTTTCCAGttcatggattttttttattaatttcagtgtTACTTGACTGAGATGAAGACGAGACAAATGTGGACCCAGATGGAGAGGTAAGAAGTAgtaacattatattatataatccTGTTAGACGGTTTGAATCTGTTCAAGGCTGACAGACACCCATAAGGCATTATGTAAGCATGCTGGCTTTCCTCAGATTAGAACTGGGTTGGATTTTTAGAATATTGAAACCATGAACAAAAAGGCATGGTCAACCAAACCCTCAGTGTGAATACAAAAGGGAGTTGAACAATTTGGCTTCAGCTAATTTGACTTCAAAGGACATtcaatgatttgtttgttctcttGGTCTACAAGCCTGCAGAATGGTATAAGACACATTAATTCAATAATACTGCTGTCACTACATTCTTGTAACATGATTATTGCCTAAAATATCAGATTCTGATGTGCTGGCATGTAACCCTGAAAACATTAAACCATCAGGAACATTCAACCAGAGTTACTCCCCTCACCCCCAGCCACTTTATTGGATCCACATCTAAAGGGGCaccattttcataatttacaaacacttagtttttttgtaaacattgctttatatacatttctcaaatgtaaaaagtaaaatcatgaCAAAAACACACTTAAATGTTGAGATGTACTCTGTTAAATGTATGCAATCTTTCATAACTCAATTGTACCCCTCAGTCTCTATGATACCTGTAGGGCATTAGCATTTCATACAAGGAATTCCCTGCCACCTTAGCTATGATAAAATTGTGTTCATTAGGTAGTTTAGTGTAGTCCTAGAGAAGAATGGGAACCCTCCTATCACCCACCACCACACAgatgattaattcattttaaccAGGAAGATCTTTTCTTTTATGAGTGAATTAATATGCCCCTAAAACCAGGGCTTATTGCTTAATTACTGCCaatcattaaaaagcaaaaatttGGCATATTTCCTTAGGAAGAAAGTTCTTTACAGTGCTATGCTTGAATTTGGCTCCTCTCTCCATGCTATTTTATAGCTAATACCCAGTTTCACTGACAATACCCTTATTTGTTTATCATATAACTTCATATACAAGCTCTTAATTATTCTCTAGAATCATAATTTAAGTTCAGTATTCCAAATCTGTATTCTGATTAGTACGTTTGTGCAGTTAATGCCTATGTTTCAGTGCCAGTATTGGCATGCTAAGGAATACAGTAATCGTAATCATACAGtaatacagaatacagtaaGCTGCCTGTCCCTATGTACTGactttaaaatactgattaGCAACTGATTCACTCTTGCCACAAGgtcaacacattttataaacGCATGGCAGAATTGAAAAACTTATTCTGGCCTGGtcctgccaagaaataaaataaattccagaTTTTTTTACACTATAACACCTACTGAGGTACCTTCAAACATACAATTATATGAACATTCGTTGTCACCCATGTAGCACATTACAGTTTGAAAATCACTGACCAAAACAACACATGGCCAAATTATTTATGCAGCCCCACTAGGAatcgac

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200592 lncRNA upstream 80908 10759976 ~ 10760189 (+) True G159333
TU200579 lncRNA upstream 83275 10747489 ~ 10757822 (+) False AMCG00001645
TU200580 lncRNA upstream 83275 10756134 ~ 10757822 (+) True AMCG00001645
TU200582 lncRNA upstream 85967 10747489 ~ 10755130 (+) False AMCG00001645
TU200532 lncRNA upstream 153661 10684782 ~ 10687436 (+) True G159294
TU200649 lncRNA downstream 123500 10967334 ~ 10968401 (+) True G159377
TU200652 lncRNA downstream 125567 10969401 ~ 10971236 (+) False G159378
TU200653 lncRNA downstream 125567 10969401 ~ 10972090 (+) True G159378
TU200738 lncRNA downstream 373485 11217319 ~ 11221908 (+) True G159441
TU200801 lncRNA downstream 592828 11436662 ~ 11439612 (+) True G159483
AMCG00001657 mRNA upstream 43347 10796728 ~ 10797750 (+) True AMCG00001657
AMCG00001645 mRNA upstream 83239 10747671 ~ 10757858 (+) False AMCG00001645
AMCG00001644 mRNA upstream 123415 10709873 ~ 10717682 (+) True AMCG00001644
AMCG00001646 mRNA upstream 135820 10694966 ~ 10705277 (+) True AMCG00001646
AMCG00001643 mRNA upstream 171188 10655187 ~ 10669909 (+) True AMCG00001643
AMCG00001654 mRNA downstream 8039 10851873 ~ 10870202 (+) True AMCG00001654
AMCG00001650 mRNA downstream 61640 10905474 ~ 10918546 (+) True AMCG00001650
AMCG00001651 mRNA downstream 75421 10919255 ~ 10937919 (+) True AMCG00001651
AMCG00001663 mRNA downstream 148244 10992078 ~ 11042644 (+) True AMCG00001663
AMCG00001665 mRNA downstream 431450 11275284 ~ 11280488 (+) True AMCG00001665
TU200393 other upstream 926433 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 2679282 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 2907542 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3094117 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3103207 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 1486154 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 3425781 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 4487786 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4588503 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 5393428 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile