RNA id: TU200738


Basic Information

Item Value
RNA id TU200738
length 4536
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G159441
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 11217319 ~ 11221908 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ttaaatacattttattaacagaTACTGACACTCATGTTCACAAAACTTCCAACACCCAACCTATTGAACATCTTTGTGCATCAACTATTTTCTTGGAACCCACTATACacagatcatatatatatatatatataaaaaaaaaaagatccacaCTGACAATATATACAGTCCGAGAGACAAATACAGAATGGCATTGaacaattaacaataaataagcaGGCACTTCTGAACAGATGCACAGAACACTGACACAGTCAACTACAActgaaagcaaacacaaaagaaTATTTttgtagggaaaaaaaaaagcatcagcGCAAAGTGTGTACTTTAATCACCAAAATATCACCTTTGGTTCTTGTTTGAATACCCGTTTAAGTTTGTGCATTTGCTACCCGCTGATATGCTCAGTAGACAGTGAAGCAGGTTGCGAAGATACACCTGGAAGCTACTatgtgagtgggggggggggcagagataATGTAGATGCATgcatgaataaaatgcaaagggTAGATCGAACATTCTTTTTTTCAAGAACTATTTAAAAAGGCACCAAGGGTATGAAATGCAAACCTAAGCAACCACCCCATCCACAacaacacacttacacacagaccAGGGGTGAAAACTCCCTCCATTTACCATTGCAtaacaatataaacacatgAAACCATCTTAAAAGTCCTCATCCATTGTGAATTAGTCAAGATAAcggatgcatttatttattttaaggataaTCCAGTGTGAATTTTCGTAACACAAAGACAAAATTGACATGGGACAACCTGGatgtttttctgcttctaaCCAGGCGATCCTTTATGTTCAAGAGCAACTATCAAAAtatgggagaaaaacaaaaactttcaaaacatgaagaaaacaaatgctggtTCATAGCAACCCACCTTTAAGGAGTCATTGGTTCAAATGCAAAATCTCTTTagtaaaaaggtaaaaatacaaaaagacacaaTGAGACTTAACTGGATTTCAATTGGTTTCTATGCATACCAATATATAGCTAACTTGACCCAACAGAAATGATCATGTAGAAATAATTAGGATTACAAAACTTCTACTAATTGCATAAGGAAAACTGAGTTCAAGTCACGTGAGTAGAGAACAAATACTGGTGTGTGATTTTAAGGAATGCAATCCTATTTTCTAGTACCTTTCAGTTTTATTCTAGATTAATAGAGCACATTGTAACCACTATGACAGTCGGATATATTATGACCTCTTAATAAACCATATAATTTAAGAGGCTAATTGTATTATGGGGCCTGCAATGAATTTGGAACATTGTCCttcaaaatgctgaaataaattaagGACCCGTGATCCTGTCTGAACTATGCATGAACTGATTTGCCTTTTCAGCAACATGATAAGGATATTCTCTACTGCAAGTGTATGAAAACAGATGGGCTTTCACTTCATAGATATAACTCTTTAATTGCATATTGGTTTCaacataaaatacttttcattcACCATCAAGTTTCTGCCAGCCTTGTAAACCTACTGAAATGTATCCAGCCCCTGAACTGATCATCGGATTTCATTCCCGACACTATTctataaaacatcaatttttaCCACTTGCACATAATCTCTAGATAGTTATGGGTATTTCTCCCCTCCCCAGTAGGGGGCTCTGTGAAAAAGTGGGACATTATCCAACAACATTTTTcccaattaaatatttccaaagCAAAGGTGCCTTCCATTTCCTTCCTTCCACCCTTGCTCCATGCAATTCATCCTAATATATAACCTTATAACAATCTTCCAATGAGAAACCCTCATGTTAAGACTTATTCATTCCTTACACGAAGACCAGCTCTGATAAACCCCATGTTTTCGGCCTCATTCTGGccatgagtatttcacagaaatATGTAGGAAACATTATGgaggaaaaataagaaactgaGGGCTAACCCCTCAAAATAACCAAATGACATGCAATGGCTTTGGAATCTCTTGAATTAAATTTAgtggtttattttcaaaatgccatCATAGTCTAATGCATAGTTTTCCTATGTGCCAGGGTTCCTCCAAAACTGAATGTTCCCCaacttgcttgtttttttccaaaatgtatgaATGAACTCTGCCCTCTTACAACCCAACATTGCAaattgactaattcttccacTTAAATGCTTGTTGATGTGCCCAATGTGAAGCACAATCTCACCCTTGCATTGAGAATGTTAGTTGTTTTTGgggtgaaatgtaaaaacatgaacataaaaCCATGTTTAGAAGAAACTTTCAGCAGAGAACTTGCAATACAGGTTTAATTCAGTAAGTCTGTGTTAAGaattttaatactgtttttgtgCTCATTAATATTGTGcagaatattaatgtttataaaatgtatatttaaggaTCCTGTTTTCAGAACATCTTAACGCCTGACATTCTTAAATTTTATTAAAGcagcatttttgcattttttttttttattctttacaaaatATTCACCTCTCTAGTagattaaacacatttctactAGCTCTGatgataaaacatgaaaaatgtttagAGATTTCAGTTCGAATGCAATCACATGACAATCCATCATGAGTATAAAAAGATGGGtttgcttaatttaaatgtgatgcACAACAGGCAAATGCCTTTAACCAAGACAggtataacaaacaaaacagacacatcaTTCAACCAATGTCACTTATTTTTTACCATACAGAAGATTCTGGCAAtactagattaaaaaaaaaaaaaaaaaaagcattcactAGAAGCTCTTATAGGAACAGTCCCAAAACAAACTTTTCTTGGGGTGGTCACATCTTTCCATGGTATTTATGCTGTTACATAAGCAACTGTGTTCTTCAAGCTCACCCCTACACTCACACTCCCTGCAATTAATTGTTACAATGCACCACAGTTGCAAAAATATGCTCAAATTAAATCCAGCATTTGAACTGGCTTTTTCAAAAGGAAGTAAATGTGCccaaatgataaaaaaaaaaatatatatatatatatagatctagtatagattttataaaatgctgcactttgcaatttgttttcaaaatatgggccagtttttttatataataaatagatattttttagatatcattttaatttaatataggaaatttaaataaacagcttcAACTGTGGAGCAATTTTTTGGGAATGAcagaaaatcaaaatgttggGTCACACATTCTCAGACCCTCTGCAAGTCAGGCACACACTGACATCACTGACATCACTGACATCACTGACAGTTTAATTCTGGGTCATTAAGCCATGACCATATTTTGATCATTTCTTGAGGAGTTCTGCTGTGAACAAGCATCAAGCCTTTATAAGCACAAGGATTATTTCTGTACTTCTCCTCAATATCAAAAGTCCTGAAACCTTTGTGCTTCTCTGGGACGAGACCAAGTTTCTTAAGGCACATGCCTGTATAGACGTCATCGATGGGATACAGTGACACTTGCTGGGACATGTTATACAGCCTCAGTGCCAGGCTTCCCGAGTAGAGGAAGCCTCCGCCGCCAGCGTAGGGTGGGTACGGTCCCACAAAAATGCTCTCTGGAATGAAGTACTTCAGCTTCTTGTCCCGGTGAGGTCCCGCATTTGTGATGACATCCCCGATGAACAAATCTTTGGATTTTGGGTGTTGCAAGCCCTTCAAGTATTCCAGGATGCGATAGGTGTTCACAAAAACGTCATCGTCCCCCTTAAACACAAACTGTGCCTTAGAGCAGTACTCATTGACCCACTGCAGGAACAGGACTTCCTTGATTGTCAGGTTGAAAAAGGAGTCCCTGTAGTCCCACATCAGGATGTCCCCATACATCTTGCTCTCATACTCCAGCATTTTGGAAAGGTTGGGGAAGTGGTCCACCGCCGTCGCATTGCCCAGCAGAAACACAGTGGTCACCGTCATGTTCCCCAGTTTACCAGCCTTCCCCCAAGACTCACGGATGGCCTGCCTCCTATCGAAGTGAGGAGCCAGGGATTTCACGGCCAGCAGAAGGAAAGGGTGGTCCTTGCACTTGTGTGGTTGGTTCACCACCATGGGATACGTCCTGCACTTCATATACAGAAGGAAGTCTTTGAAGCGCTCTGGGAGGGAGTTGTAGTCCTTCACTTGGGTCGTGACACTGATATCAGGGTCGCAGCCGTTCAGGGAGCTGCCATtggcggtggtggtggtgctggaCACACTATCCAGAAAACTGCTGATGCTTCCATTCAGCACAGCCAGGATGGGGTTGTGGATATAGTCCAGAGTCTGTTGCTCGCGGTTCCAGTACGCGTCAAAGGGGACAGGTTTCTTCCAAAACCTCTTGGCTGGAATGTGCACTTTACTACTGCTGCTTTTGTCCTGGCCTCCACTCCTGGAGACTTCCACCACAATGTAAATGAAGAAATTCACCATCATCATAATACCCACCACCTTCACCTTCACCTTCTTCATCTCGTTTTTCTGGgaagaaaaagcacagaaattAGCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU200653 lncRNA upstream 245229 10969401 ~ 10972090 (+) True G159378
TU200652 lncRNA upstream 246083 10969401 ~ 10971236 (+) False G159378
TU200649 lncRNA upstream 248918 10967334 ~ 10968401 (+) True G159377
TU200623 lncRNA upstream 373485 10841097 ~ 10843834 (+) True G159356
TU200592 lncRNA upstream 457130 10759976 ~ 10760189 (+) True G159333
TU200801 lncRNA downstream 214754 11436662 ~ 11439612 (+) True G159483
TU200938 lncRNA downstream 403763 11625671 ~ 11647452 (+) True G159594
TU201143 lncRNA downstream 1454903 12676811 ~ 12679489 (+) True G159775
TU201183 lncRNA downstream 1563887 12785795 ~ 12876686 (+) True G159798
TU201187 lncRNA downstream 1577601 12799509 ~ 12810735 (+) True G159800
AMCG00001663 mRNA upstream 174675 10992078 ~ 11042644 (+) True AMCG00001663
AMCG00001651 mRNA upstream 279400 10919255 ~ 10937919 (+) True AMCG00001651
AMCG00001650 mRNA upstream 298773 10905474 ~ 10918546 (+) True AMCG00001650
AMCG00001654 mRNA upstream 347117 10851873 ~ 10870202 (+) True AMCG00001654
AMCG00001657 mRNA upstream 419569 10796728 ~ 10797750 (+) True AMCG00001657
AMCG00001665 mRNA downstream 53376 11275284 ~ 11280488 (+) True AMCG00001665
AMCG00001664 mRNA downstream 59396 11281304 ~ 11287784 (+) True AMCG00001664
AMCG00001669 mRNA downstream 88662 11310570 ~ 11325141 (+) True AMCG00001669
AMCG00001679 mRNA downstream 116459 11338367 ~ 11346415 (+) True AMCG00001679
AMCG00001678 mRNA downstream 124651 11346559 ~ 11372681 (+) True AMCG00001678
TU200393 other upstream 1302655 9913308 ~ 9914664 (+) True G159174
TU199983 other upstream 3055504 8159146 ~ 8161815 (+) True G158836
TU199853 other upstream 3283764 7933156 ~ 7933555 (+) True G158725
TU199783 other upstream 3470339 7746681 ~ 7746980 (+) True G158676
TU199779 other upstream 3479429 7736515 ~ 7737890 (+) True G158672
TU201065 other downstream 1108080 12329988 ~ 12331448 (+) True AMCG00001691
TU201467 other downstream 3047707 14269615 ~ 14270190 (+) True G160026
TU201667 other downstream 4109712 15331620 ~ 15334567 (+) False AMCG00001760
TU201717 other downstream 4210429 15432337 ~ 15439031 (+) True AMCG00001762
TU202121 other downstream 5015354 16237262 ~ 16295506 (+) False AMCG00001814

Expression Profile