RNA id: TU201414


Basic Information

Item Value
RNA id TU201414
length 2923
RNA type TUCP
GC content 0.43
exon number 2
gene id G159976
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 14147628 ~ 14151555 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAGGGCTTGTCGGTTTCACTGTTGATCTCGGCACTCAGGTCATCCTCAGACAAGACACCCTGGGCACTTTCCTTTGATTGACTGATGCTGTCTTTTAAGTCACACAGATCTAGCCTGTGATCTTCAGGTATGTTTAatgctttttccttttcagtacAGGGAAGAGTTTGGTTTCCATCCTTACATAAACTGTTTTCTAGAAGATCGCTGATTTTACTCGCCACTTCCTTGAACATCGTAGGGTCATCATTAGCGGAAGCAGCATGAAGGATCTGCAGCAGCTGGGACTGGATCTTCTCTGCCGCGTGAGCAGACTTCACATCAAGCTGGTTTGCttcaaaagacacattttcctttcttccagACAGTTCACAGGTCTTTGACTGTGGGCCTTCTTGTTTTAACAAGTCAATAAGCAGGTCAGGACTTTTGCTGTCAATATGACTAAATGGATGTTCTTTCTCCTCATAGCATGAAGCTGCACCTGCTCTGACAGTTCCACTGGGCTCCTGcacattttttatcattttgattATGTCTTCGATGACTTTGATTTCTGCCTTTTGTACAACATCTGCACCTGGATCTTCCACTTGCATGTTAACTAATTCAAGCAGACTTGACCGTAATGCACTATGGAGATCTGGCCATTCTGGTGTAGCCAAGTCTTCTTGAACTGAGCCTGTATGTCCAACTAGTaccttgtctgtattcagatctaCGGCAGGGGAACAGTCTATTTCACTACCCTTTTGGTGTCTGCTATTAGCTAAGCTGCCTGTATCCACTGTGAGTGTTGTTTCACATGCTAGACCCCGACTGTCAGATGCACTGCTTCCGTCAAAACTGTCCCGTGAATGCTGATCTCTCACACTTAATGAAACTTCATTTTCAGAAGATGTTCCACAACACTGTTCAGGAATTCCCTGGAAAGGACCTGCACCTTCTAACAAATGTGTGTCCAGCTCTGACCTTAGTCCTGTGCCTGGATCATCCTTAGATATGCCAGGCAGATCATTCACATTATGACTTACAACATCCTTCAAAATGTGCTCTGTAAGGACTTCATTTTCAGAAGATGTTCCACAACACTGTTCAGGAATTCCCTGGAAAGGACCTGCACCTTTTAACAAATGTGTGACCTGCTCTGGCCTTAGTCCTGTGCCTGGATCATCCTTAGCAATGCCGGGCGGATTGTTCACATTATGACTTTCAACGTCCTTCAAAATGTGCTCTTTAGGGACAGTTATTGATAAATCAGAGCCACAGTCTCCCATACCCTCCACTGTATCTCTAACGCTCTCTTGCTCAAACGTTACATCTTCTGCCAATGAAAAGGAACTGCTTGTTTGTAAGGGCAAAGCATCTGCTTGGTGTTCAGGACTTTTTCCACCTGGTACAAGctcatcagagagagagagtgaatcaCATACAGATGGTGTATCAGGTTTTTGTTCTGATTCAAGGGACCagtttgtaaatgtactgtCATTGCTATCAGCCTCCTTGAAGCTGTccgttttgttttcttcagttaagGTATCACCACGTGACGTACAGGACATATCTGACTCACCCTGATTCACGATTCCATTCGGATGTATAACTGATCCACTGTATCCTTTGTCAGACTCTAACTCAATGGAGTGTTGTAATGTTTCATTCCTAGATAAGGTGGTTTGCTTTTCACTTACACTTAGAGACACTGAATTGCTGTCAACTTCATGGAATTCAGGCTTTTCTGCTTGACACCGTTCATCCAAGAAGTCATCATCAATCTGGCTATGTCTAAGGATGTTTTCTATGGACAGATGCAGCTCTGTTGAATTCTGTATCATACCTCCTTCCTCTAACTGTGTGGATAAAACTGACAGGTTGCTCTGCTTATCTGTACATTCCTTACTAAGGATTTCTGGAAGATGGAACAGTTCTTTGAGCTGAGGGTCCACAACGCCAGAACCTTCCATCTGCAAGCTTGTGCCTTTCATTTTTTCAGattcatgtacatttttctCCACACTATCTCCTTCAGTGTGAGAAGGATGTTCAGTAACCTGCTCATCTATACGTTCAAGCTCAGTCTTCCCGTTTTCCTCTTTGTAACCCACAATTCCACCAGAAATAGCCTGTCCGTCCAGCAGCTTCCTATTAGTGTCATCATCCAGCAGGCCTAGTCTCAGACCTTCAGGAATACTGTGAACTGCTCCCCTCTCTGGGCCAATTATAGCATCAACAACCATTTCAGAGTTTATAATATTTTCAGCAACATCTTCATTAATTAGACCTCGTTGCACTGCCTCACTGATACTAATAGTTTTTCCAGTATTAACGTCATAGAAACCAGACAGTATGTGCAGTTTCTCCATAACTTGAAGAGCAATATGGCGTGTTATTAAGCTGCTTCCCACTGCTTCCCTCAGGGTTATTTTGGTTCCTGTTTGGGCATCAACGATTCCACCGTTCTGAAACTGCAAAGCCAAAACATCTACGGCGATCTCCTCATCAACAAGTCCTTTCTCTAGGGCTGCATTAATATCATACCGATTACCTGAAGTAACATCCAAAATCCCACCTTCTTCCACTTGTGCTCTCAAAAGTTGGAcagcattctctctctctaatgtgTCTGGCCTGGCTCTCTCTGAAAGGAACTGTTCTCCAGTGCTTTCCACGTCTGTGTTTAATTTACCAGTCAATTCTGCAGTCTCGGTCAGttctgtcatttgttttggaaattcAAAGTCATCTGGTGTTCTGGTTCGATTGTTTATGTTTGCAGAAGCAATCTCACTTGGAAACGAGCTGGTGACGGCATGATACGAGACTTCTCTGCCCTCCTCTAGAGCAGCTATGCTCAATTCTTTTCTCAGTCCTGTTTCTGTGATATCACTTATATTCAATATCTCTTTGGATGGCACACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201311 lncRNA downstream 396539 13750880 ~ 13751089 (-) True G159904
TU201247 lncRNA downstream 1146364 12997408 ~ 13001264 (-) False AMCG00001710
TU201238 lncRNA downstream 1200580 12946451 ~ 12947048 (-) False AMCG00001704
TU201236 lncRNA downstream 1201792 12942361 ~ 12945836 (-) False AMCG00001704
TU201208 lncRNA downstream 1354067 12787082 ~ 12793561 (-) True G159818
TU201434 lncRNA upstream 24186 14175741 ~ 14203768 (-) True G159995
TU201466 lncRNA upstream 115832 14267387 ~ 14267741 (-) True G160025
TU201482 lncRNA upstream 159586 14311141 ~ 14316143 (-) True G160040
TU201527 lncRNA upstream 269382 14420937 ~ 14517285 (-) True G160080
TU201531 lncRNA upstream 312175 14463730 ~ 14465692 (-) False AMCG00001733
AMCG00001729 mRNA downstream 77753 14060233 ~ 14069875 (-) True AMCG00001729
AMCG00001726 mRNA downstream 87902 14057676 ~ 14059726 (-) True AMCG00001726
AMCG00001728 mRNA downstream 106448 14038870 ~ 14041180 (-) True AMCG00001728
AMCG00001727 mRNA downstream 162301 13978613 ~ 13985327 (-) True AMCG00001727
AMCG00001715 mRNA downstream 238658 13823609 ~ 13908970 (-) True AMCG00001715
AMCG00001744 mRNA upstream 189203 14340758 ~ 14343171 (-) True AMCG00001744
AMCG00001743 mRNA upstream 196538 14348093 ~ 14359579 (-) True AMCG00001743
AMCG00001731 mRNA upstream 213892 14365447 ~ 14380677 (-) True AMCG00001731
AMCG00001732 mRNA upstream 246980 14398535 ~ 14421490 (-) True AMCG00001732
AMCG00001735 mRNA upstream 273720 14425275 ~ 14431342 (-) True AMCG00001735
TU201233 other downstream 1213960 12931231 ~ 12933668 (-) False AMCG00001702
TU200551 other downstream 3476387 10670437 ~ 10671241 (-) True G159303
TU200475 other downstream 3925910 10221169 ~ 10221718 (-) False AMCG00001628
TU200134 other downstream 5607370 8514367 ~ 8540258 (-) True G158971
TU199737 other downstream 6483056 7662091 ~ 7664572 (-) True AMCG00001554
TU201592 other upstream 399134 14550689 ~ 14551764 (-) False AMCG00001756
TU201593 other upstream 399134 14550689 ~ 14566917 (-) False AMCG00001756
TU201595 other upstream 399134 14550689 ~ 14566917 (-) False AMCG00001756
TU201596 other upstream 405277 14556832 ~ 14570927 (-) True AMCG00001756
TU201597 other upstream 409933 14561488 ~ 14570927 (-) False AMCG00001756

Expression Profile