RNA id: TU201759


Basic Information

Item Value
RNA id TU201759
length 530
RNA type TUCP
GC content 0.40
exon number 3
gene id G160255
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15504311 ~ 15520639 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctcaaatattccacatgacacttagaacaggggatgtgccagctgactggaagacagcaaatgtcaaaccaatccacaagaaagaagacaaaactgagccaggaaattacagaccaatcagtctcacctgcatcacctgtacaatgttggaaaaaatgattagacagaaaatagaggagcatcttaatgaaaaccatattcttggagatagtcaacatgcaactgcagctgtagatcatgtgaaagcatttgatatgatatacttagattttcaaaaagcttttgataaggttccacaccaaagactgatcctcaaattggaagctgtaggcattcagggtaatgtaagtagatggattatgaactggttgatgtctaggaaacagagggtgtcgattagaggagtcgcttctaactggagtgaggttgttagtggagttccacagggatcagtactagggcctgtgctttttctaatctatattaatgatctggactctgggatagttagtaaacttCTAGGAGTCTAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201599 lncRNA downstream 940806 14559152 ~ 14563505 (-) True G160132
TU201527 lncRNA downstream 987026 14420937 ~ 14517285 (-) True G160080
TU201830 lncRNA upstream 73968 15594607 ~ 15595355 (-) True G160311
TU201842 lncRNA upstream 83204 15603843 ~ 15610716 (-) True G160319
TU201877 lncRNA upstream 170930 15691569 ~ 15692614 (-) False AMCG00001784
TU201932 lncRNA upstream 271357 15791996 ~ 15796358 (-) True G160387
TU201925 lncRNA upstream 308119 15828758 ~ 15829761 (-) False AMCG00001791
AMCG00001771 mRNA downstream 2518 15500360 ~ 15501793 (-) False AMCG00001771
AMCG00001773 mRNA downstream 30622 15450729 ~ 15473689 (-) True AMCG00001773
AMCG00001764 mRNA downstream 55198 15438824 ~ 15449113 (-) True AMCG00001764
AMCG00001763 mRNA downstream 145292 15336021 ~ 15359019 (-) True AMCG00001763
AMCG00001765 mRNA downstream 245695 15230372 ~ 15258616 (-) True AMCG00001765
AMCG00001772 mRNA upstream 5059 15525698 ~ 15548444 (-) True AMCG00001772
AMCG00001774 mRNA upstream 32054 15552693 ~ 15575397 (-) True AMCG00001774
AMCG00001777 mRNA upstream 92037 15612676 ~ 15640633 (-) True AMCG00001777
AMCG00001779 mRNA upstream 122180 15642819 ~ 15654841 (-) True AMCG00001779
AMCG00001778 mRNA upstream 134732 15655371 ~ 15677438 (-) True AMCG00001778
TU201753 other downstream 2543 15499553 ~ 15501768 (-) True AMCG00001771
TU201755 other downstream 2543 15499553 ~ 15501768 (-) False AMCG00001771
TU201754 other downstream 2543 15500363 ~ 15501768 (-) False AMCG00001771
TU201596 other downstream 933384 14556832 ~ 14570927 (-) True AMCG00001756
TU201597 other downstream 933384 14561488 ~ 14570927 (-) False AMCG00001756
TU201878 other upstream 173035 15693674 ~ 15702500 (-) False AMCG00001784
TU202328 other upstream 1570779 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 2010227 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 2339500 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 2388115 17908754 ~ 17910853 (-) True G160925

Expression Profile