RNA id: TU201830


Basic Information

Item Value
RNA id TU201830
length 641
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G160311
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15594607 ~ 15595355 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGAAACAGTACATTCAAACGCATCACATCACATACAATCCACCTGGTGTTgatacaaatactgtacaatCACCACAGCACCACAGTAAAGGAGTAAGTTATCATTTCCACAGGGTGCACTGATCACACCTTCAGTTCTCATTTTTCaccatttttcaaaataaatcaaatgcatcagGAGGCATCTCACCTCAGGATGGCCAGTTGCACAGCCTTGTCCACACGATGGTGATCCAGCGCTCGCACCAGTGCCTGGTAGGTGTCCTTGTCCTTCATGACGTCATTGAGCTCCTGCTCCAGCTGGGACACATCATCACAGATCAGTCGCTCCAGGGCCAGCACGATCTCCTTGGTGGTCGTCATCTCCTTCAGGCTGACCAGTAGCATCTTCAGCTCCATGTCCTTGAAATCCAGCTCCTCTTTTGACTCTTTTTTTCTCAATCTTGTGCACCATGGAGATCTGGTTGAGAGCTATGATAGCCAGCATCCTCTCCTGGCTGGAGGTTGAGATGCACTTCTTCCCAACGCAGTGGTTGAGGACGGGACACACGTCACAGGCCACCAGCTGCTCCGCCAGGCTCTTGTGGTTTGAAATCAGCATGATAATGACCAGAAGGCCATTGCGCACAGCAAAGGTACAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201599 lncRNA downstream 1031102 14559152 ~ 14563505 (-) True G160132
TU201527 lncRNA downstream 1077322 14420937 ~ 14517285 (-) True G160080
TU201543 lncRNA downstream 1100958 14491898 ~ 14493649 (-) True G160094
TU201534 lncRNA downstream 1114248 14474242 ~ 14480359 (-) True G160085
TU201531 lncRNA downstream 1128915 14463730 ~ 14465692 (-) False AMCG00001733
TU201842 lncRNA upstream 8488 15603843 ~ 15610716 (-) True G160319
TU201877 lncRNA upstream 96214 15691569 ~ 15692614 (-) False AMCG00001784
TU201932 lncRNA upstream 196641 15791996 ~ 15796358 (-) True G160387
TU201925 lncRNA upstream 233403 15828758 ~ 15829761 (-) False AMCG00001791
TU202118 lncRNA upstream 639060 16234415 ~ 16235803 (-) True G160538
AMCG00001774 mRNA downstream 19210 15552693 ~ 15575397 (-) True AMCG00001774
AMCG00001772 mRNA downstream 46163 15525698 ~ 15548444 (-) True AMCG00001772
AMCG00001771 mRNA downstream 92814 15500360 ~ 15501793 (-) False AMCG00001771
AMCG00001773 mRNA downstream 120918 15450729 ~ 15473689 (-) True AMCG00001773
AMCG00001764 mRNA downstream 145494 15438824 ~ 15449113 (-) True AMCG00001764
AMCG00001777 mRNA upstream 17321 15612676 ~ 15640633 (-) True AMCG00001777
AMCG00001779 mRNA upstream 47464 15642819 ~ 15654841 (-) True AMCG00001779
AMCG00001778 mRNA upstream 60016 15655371 ~ 15677438 (-) True AMCG00001778
AMCG00001784 mRNA upstream 96228 15691583 ~ 15702400 (-) True AMCG00001784
AMCG00001783 mRNA upstream 177975 15773330 ~ 15779288 (-) True AMCG00001783
TU201759 other downstream 73968 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 92839 15499553 ~ 15501768 (-) True AMCG00001771
TU201755 other downstream 92839 15499553 ~ 15501768 (-) False AMCG00001771
TU201754 other downstream 92839 15500363 ~ 15501768 (-) False AMCG00001771
TU201596 other downstream 1023680 14556832 ~ 14570927 (-) True AMCG00001756
TU201878 other upstream 98319 15693674 ~ 15702500 (-) False AMCG00001784
TU202328 other upstream 1496063 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 1935511 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 2264784 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 2313399 17908754 ~ 17910853 (-) True G160925

Expression Profile