RNA id: TU201932


Basic Information

Item Value
RNA id TU201932
length 4287
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id G160387
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 15791996 ~ 15796358 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttttaaacaataatgtgTGCAACAAACCATTGGTTAACCAAAAACAGGTCATTTACAAGATTAGATTTTCCTCTTACATACATGAAATAATTCACAATCTAAACTTTTAATACATAAAGATTACAGTACAGTCATTTCTAAACAGGAGACGCAGTCTCTTATATTAAGCCACAAGCTCTAATATTCCCGTGTTCAGACACACTCTGTATCGGTGTGCATCTAcgcatgtgtgtttatattgtcCACTTAACAGCAGTCAGTGGTTACTGCAGTTACCAGCATGCCACAacccaaagggcagggactgaATCCCTTTCGGACACAGAAAGAGGATCTTTCCTTTAAAGTCGACTGTATCCAAGTCTCTTTTGAGCAGCAGTGGTGATAAATCCCAGctaatgcaaatgttaaaataatttcgTGAGTTTGCCTGCAGGCCAATGCAAAGCACTGTGCACCGATGCAAAAACTGACACGTATTTGGTTATTCGTGTTCATTAAGAGGGAGAGAATAACAGCCGATTCCCcccatacatttcaaataaaaacaaaacaaaaaacacagttgaCATGAGAATAGCAAATATTTCCACAGATAGATTAATTTGGCAAATCCACACTTCCATTTGGATTTTAATCTTGTATGCACCGATTGCTTGGAACAGTGTAATTCATTAACTTTCAGAAAGTAGCAGGTCTTAACGGAAACCcttaaattgtgattttcagAGTAAAATCACAGAAGAACACGTTACATACATAGAGTGCTTCACAAATCAAGCAAATGAAACCCTTACTTTATTGAGACTATTCTACTAAGACTAGAAGGGCTGCATAAATATTCTCATCAGCTGAACAAGTTTTGGAGCCTGATCTTTTCAATCAATTTCCCTCTTTTTCCACCCATTCTGGGAAAACCCTCTGATCCATCTTACAGACTTCAATGACATACCATCAAGTTAGATTTCCTGACACTAACACACAATCCACGAACGTCTCCCCAGCAAATTAATAGAAATCTGACCACTGGTTGAAAAGGACAAAGATTCTCAGTTCTACTGTTATGCAGGCTACCTAGGACTGAAACTGTAGGGATTTAGGCTTCCACATGACTCTTCCAAGCAAGAAGTTATTGTTTTAactggaaaaatgaaaaaacactttggttagaaataaaataataaaaactttaaatgaaGTCAAGTTCTGAATATGTTTAGGAGTGATTATTCAAGCTGCTAAAATATCCTTTATATCCCAGCACATGCATGACTGAGATAATATCCTTTCATAATCTTTTAGTTTCTTCCCAGATCACCCATCCACAACTCAAGGATATCAATAACCTATTATCCGTGTGAGGTAAATGTGTTCACATGACAGGACTTGCTGGTACAAGACAGTCATTGCAGTTCTTATTTGACCACAAGCTATGGAGAGAGTGGGTGCAACCCTCGAACAACACTGAACGAGTTGCACAATATCAGTCTGCCGTGAGTCAGGCCTGGGAGAACTCGCCGCCGAGTTGTCGCAAAATGACAATGAGCAAGGAAAGCTAAGTGTTGGCAAACGGCTAATGATCCGGAAAAAACGAACACGGAAAGCACTCCGGAAAAAGTGCTTTTAACTAATCTTCTCCGTCTCGCCTCAAGACATCCCCTATCCAATTCTGACAGATTATAGGCCCCATGACTAACACGAAACTaaggaagaaaaacacttcTCTTACCGGATCATATCCTCACAGACAAAgacatggatggatggaggaTGGGACTGTTTGATCAGAGAGCTCTCGCACCCGACTACTTTCTGAAAACGCCTTTCGACTTAACAACGGCCAGATAGTCTTTTTGAGTATTTGAGGATTTTCAATAGTAATAAAGATGGGGAAAAACATGCATTGCAGACTGAGGGAAAACATGAATAGTCAACACTGCTGTATATTGCCATGGCAGGATTGGCCATCTCAGAAAACCAAGACAACCCAGTTTTATGTGGGTTTCTTGTAGACATGGGACAATCACACAAATGGCTAGAGACCAGCCTGTGCTGGAACACAAATACATTGCAGGTTAATAATTCTCTAATTAGACTAAAAAAATatagggcaaaaaaaaaaaaaaagttcgaGTCTAAGTGTAGTTTCAAATGTACTACAATGAGATCAGAAGTGTTTTCCTGCCTTATTCTAATACTTGTGTCAGGACAAGCCAGAAAGCCATGATTTTATAGAAAACATCTGGAGGCACTATGAATCCCAACTTTGAAATGGAGATGTACAGAAAtgggcctctctctctcactctccctccgtcacacacacacacagactatttgtaaatgtactacAGCAACACACCCATTACCAGGGTTACTGTCCTGTCCCGATTCGAGGCAAGGTACAGGTTCAAGGTGCAAGAGCATAACTCAAGAAATGCACATCCTCAGCACAACCTCTCGTGGTTTCACATTCTGCTAATAAACTAATAAAGCAACAGGCGAAACGCAGCCCAGCTGAAGATTCACATTGTCTTCCCACAAAATACAGACCGGTTTTGAACGTCTTCgctaaataaaacaaacgtgccgtaaaaaaataaaataataacagcccGTGTCGATTCTGATCGCGACGTCAGAGACGTTGAGgaacataatttaattgtaaaatgcaaatggaaGTTGTCATCGATTCATCTTTGCACAAGACTGCGGGAGCTGATTTTTTGGAGCACTACACTGTAGCGCTAACAGAGGAGAGTTACTTTCCTGgaataaacttaatttaatcTACAAAGAAACCCCcctttttgaaataaatgaaggaaaatCTCAATATTATATGTCCTTTCATTTTGGGAGGGGGAAGCAGTACAAGAATAAATATGCTTAGGACTTAAAACATTCCTTTCTACTACTTCACCTTTAGTTTGATGCCAAAACACCTACTTTCCTTTACAGTATGGCAAGCTCTTTAGTTTCGATAACCACCAGTATAGCGCCTTTAATGCCTCTTGAACAGGCAAGCAGAATGACTCTTTGGCTAGATATACATTTCAAGTCACTCGCTCCCACAGCTACGCGGGACTTCACTACTTCCTCTCAGCACAGAACTCttgcctctctcctctctgctgtcAGTACTAGATGGCAACTTGGGTGTCGATTTAAAATTTAATACAATAGCCTAGCAGTCAACAGCATCCCAACCCCCAGATGATGGGGCAAAACCCTAGAGCGTGCcagaggggtggaggggggcaGTTTGGAGGGAGAGGGCAACTGGCTGCCGTCGGACACAGCCGCCCCTCCCACCTCCCTCACCCACTCTCTGAACAAcaacgaaaacaaaaaaaataataagagtaacaacaaaaaacaaaagctcccTTCTATTTTTTGCTGCGCAGGCGCTTGGACTGCCGAGGGGAGTCCGGGGCCTTCCGGGTGCGTTTGCAGGGGATTTCGGCGCCCCCCCACGGCGCTGTCCATCAGTTCGCGGAGCTTGTGCTCGAGCTCGGCCAGCCGGGCGTTCTGCTCCCCGATCACCTGCGTCTGCTCCAGCAGCTTCTGCTCCTGGTCCTGCAGCTGCTtctgctgctccagctgcttGACGCGCACCTCCGAGATCTCCCGCCGCAGAGCCGCCATGGCCGCCCCGTTCACCTTCACCTGCTGCTGCACCTTCGTCATCTCCGAGCGCGACGGCGTGTTCTTGGCCAGGAGGGACATCGTCGTGAGGGAGGTGGAGGGTCCCGccactgagggagagaATACCGCTCTACCAAAGCTCCTCTTTAATAACATCGGCACAGACAATCAGGTTGCATGATATCTAGCTCTTTAAATGTCAAATTGCTAAGGACAGATCTCACCTCTCTCATGGCACATTAACTCGGGATATGTAGAGAACACAGCAGGGGTGGACGACTGTACCTGGGGTGGAGCCGATGAGGCGTCCGGAGAGGTCCGCCCCGGGGAGCTTCTTCTTCAGGATGGGGACGATCTTCTCATCAAAGTACTCCATAGCCATGGAGGAGATGTCCCTCAGCTCCTGGAGCACCTCGTGAGCACGCTGCGGCGCCCGTGTGGAGTTCACGTAGCGCAACACACGGTAGATCTCATCGATCACCTGCCAACACAGCGGGCAAGCAGGTCAGACATTAGAGGCCGATGcctacatacacagacacagccatGCAGTTTGAAAAGATGGCGACAGAAGACATACTCTTAGATTCCTTAGTTAAATGTCTCAACACTTCATCAAAACACCACACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU201877 lncRNA downstream 99382 15691569 ~ 15692614 (-) False AMCG00001784
TU201842 lncRNA downstream 181280 15603843 ~ 15610716 (-) True G160319
TU201830 lncRNA downstream 196641 15594607 ~ 15595355 (-) True G160311
TU201599 lncRNA downstream 1228491 14559152 ~ 14563505 (-) True G160132
TU201543 lncRNA downstream 1298347 14491898 ~ 14493649 (-) True G160094
TU201925 lncRNA upstream 32400 15828758 ~ 15829761 (-) False AMCG00001791
TU202118 lncRNA upstream 438057 16234415 ~ 16235803 (-) True G160538
TU202128 lncRNA upstream 518969 16315327 ~ 16315563 (-) True G160548
TU202225 lncRNA upstream 1020581 16816939 ~ 16817195 (-) True G160631
TU202234 lncRNA upstream 1058295 16854653 ~ 16854957 (-) True G160640
AMCG00001792 mRNA downstream 7841 15781218 ~ 15784155 (-) True AMCG00001792
AMCG00001783 mRNA downstream 12708 15773330 ~ 15779288 (-) True AMCG00001783
AMCG00001784 mRNA downstream 89596 15691583 ~ 15702400 (-) True AMCG00001784
AMCG00001778 mRNA downstream 114558 15655371 ~ 15677438 (-) True AMCG00001778
AMCG00001779 mRNA downstream 137155 15642819 ~ 15654841 (-) True AMCG00001779
AMCG00001789 mRNA upstream 2402 15798760 ~ 15817684 (-) True AMCG00001789
AMCG00001788 mRNA upstream 21925 15818283 ~ 15827775 (-) True AMCG00001788
AMCG00001791 mRNA upstream 33308 15829666 ~ 15833806 (-) True AMCG00001791
AMCG00001790 mRNA upstream 40666 15837024 ~ 15850756 (-) True AMCG00001790
AMCG00001793 mRNA upstream 54429 15850787 ~ 15865923 (-) True AMCG00001793
TU201878 other downstream 89496 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 271357 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 290228 15499553 ~ 15501768 (-) True AMCG00001771
TU201755 other downstream 290228 15499553 ~ 15501768 (-) False AMCG00001771
TU201754 other downstream 290228 15500363 ~ 15501768 (-) False AMCG00001771
TU202328 other upstream 1295060 17091418 ~ 17092449 (-) False AMCG00001843
TU202450 other upstream 1734508 17530866 ~ 17531990 (-) True G160817
TU202549 other upstream 2063781 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 2112396 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 3039424 18835782 ~ 18850884 (-) True G161153

Expression Profile