RNA id: TU202248


Basic Information

Item Value
RNA id TU202248
length 1743
lncRNA type inter_gene
GC content 0.47
exon number 4
gene id G160649
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 16905249 ~ 16910033 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggagaagggagaggTACCTGTGAGGGGCAGCGCGCTGCGGTTCCCAGCCATGGCTCTGCTCGGATGCACCAGGTGAAGCCAATGCTGCAGCGGACAGGTTCAGCgctttctcctcctctctgccgCTCCCAGAGCTGTCAACTATGAGACACCAGTGGGGACGAATAGTTCTAAAAACGTCTGTCAAATAATGTCCAAATCCTTTTAATTCAATGCGCCTCGGCTTCTCCCGCCCGACTGAAGCCCCTCTGCCTCCACAGTCCCAGGACAAGTGATTGATCAGAGACGGGACACAGGCTGCAGACAAATGGGATCTCAGCTCGTCACTCACAAgtccgCGGTGTGTACTTCATGTTTGCCGGCATTGCGTGCGCTGCTGTCCGGAGATTGATCATCTGTTAATCTAAATTCAACGTGAAAGGGACAATAGTTTTGCAACAATAAATCAGCGCGTCACGATCTACGGAGGTCTGGATAAGCATCTCTACACCAAACGAGAGCTTCTCTTCTCCAGCGCGCCGGGGTGGACGCGACGGATCGCCTGTCCAGATTAGAGAAGCTCTACCTCCTCAGCAGGAAGACGCGACTGTTATTTTGGGTGCTTTTGATTTGAGGTGGGAGCGAGGCACAGATGAAAGAGCCCAAACCGGATCTACCTGTTACTGATGTCCCTTTGAGTTTCTGTAGAGCTTCGGGGATGGCGGCGCTTGCACGCAATGCCTGGGCTGCAGGCGCGATGACGCAGATCAGCGCCGGGCGGGGGGTCCCTACACCGAGGGGGTCCATCACTGCGCCCCCGGGTGTGCCAGCCGTCCTCCTCCAATGCAACGCTGTGAAGTCTAGGCATTGTGATGCTAGTGGTTGGTAATGATTTGAACAACGCCTGCATGCATGAATGAGTGCCATCTTCTTATGAATGAGAAACGCCAGCTCTTTTAAAACCGGTGTGGTCGGATACACGCCTTCAAGGAACagtgtttatgcattttatagAAACAATAAAAGCATATGCATTGCACAGTCCATGTCTTCGATACAATAGGGTTTTATAATGTGCACTAATTTACATCATAATGCGTAACTGTGTCACAACTAGAGATACGTCCCACACAATATCCTCCATCTATCCAGGAGGTGTGCTTCATCTCAAGTGCAATCCCTACAATAGGCTGTCGGaggtgtgcatgtctgtgtgcagATGGAGAGGAGGTCTCACCCAACAATTATAGCTCTCATACACACGCAAGAGCACCTCGGAGGACTTTAAACCTCAACTAATCTGCTACTGGAACAACAACATGACTGTAAAAGTTCAAATTACTGGGTAAAATACGTCCTTGTACATGAACTACCACACGGTTGCATGTGCAGGAATAAACTTCGTCTCATAATGTCGGGGTTTTAGTTGAACCATTCTgatcatgcttttatttcatgTGGGATTATGTTCGCCTTCTCTATTGCTTGTAAATGGTCAAACCTCGtgcttattaaaaaatgatataaaatgtttgttctgtCCTGACAATAACACGTTTAAACTGCCGGTCCCTGGAAGCATTACGTCTCATGTAACTTATTACagcaactgaaaataataaaaccgtaaaataaaaatccttagCACTTCCAGGTTTCTGTCACTAGGGGGAGATGATGCACGATGTTGAGTATGAATTTAACTTTGATATTGTAATTGGTAATATAAtaagtatttattgatttactttggGTTTACAGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202247 lncRNA upstream 2809 16899895 ~ 16902440 (+) True G160648
TU202122 lncRNA upstream 627195 16276806 ~ 16278054 (+) True G160542
TU202022 lncRNA upstream 785983 16117205 ~ 16119266 (+) True G160464
TU202021 lncRNA upstream 790550 16114344 ~ 16114699 (+) True G160463
TU201919 lncRNA upstream 1075483 15828776 ~ 15829766 (+) True G160375
TU202349 lncRNA downstream 269684 17179717 ~ 17182601 (+) False AMCG00001841
TU202403 lncRNA downstream 498224 17408257 ~ 17408616 (+) True G160782
TU202511 lncRNA downstream 888166 17798199 ~ 17804178 (+) True G160869
TU202542 lncRNA downstream 950129 17860162 ~ 17861427 (+) True G160895
TU202559 lncRNA downstream 1006762 17916795 ~ 17917054 (+) True G160910
AMCG00001820 mRNA upstream 7441 16870396 ~ 16897808 (+) True AMCG00001820
AMCG00001824 mRNA upstream 35930 16865490 ~ 16869319 (+) True AMCG00001824
AMCG00001825 mRNA upstream 83423 16816976 ~ 16821826 (+) True AMCG00001825
AMCG00001815 mRNA upstream 135090 16762446 ~ 16770159 (+) True AMCG00001815
AMCG00001811 mRNA upstream 270234 16605907 ~ 16635015 (+) True AMCG00001811
AMCG00001818 mRNA downstream 36491 16946524 ~ 16951511 (+) True AMCG00001818
AMCG00001819 mRNA downstream 59787 16969820 ~ 16976960 (+) True AMCG00001819
AMCG00001830 mRNA downstream 85622 16995655 ~ 17008469 (+) True AMCG00001830
AMCG00001831 mRNA downstream 145448 17055481 ~ 17066501 (+) True AMCG00001831
AMCG00001836 mRNA downstream 159849 17069882 ~ 17070658 (+) True AMCG00001836
TU202141 other upstream 532945 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 609743 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 1466218 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 1570682 15331620 ~ 15334567 (+) False AMCG00001760
TU201467 other upstream 2635059 14269615 ~ 14270190 (+) True G160026
TU202413 other downstream 507318 17417351 ~ 17462934 (+) True AMCG00001846
TU202633 other downstream 1277869 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 1306542 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 1760249 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 1989304 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile