RNA id: TU202450



Basic Information


Item Value
RNA id TU202450
length 1001
RNA type TUCP
GC content 0.46
exon number 2
gene id G160817
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 17530866 ~ 17531990 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TTTGAAGTTTATTGTTGTGGGGTGGAttgaacatattttacatttaatattttaataaagaaagaaaaaatacaaattgtcaGATAAACAGCGACAACGTTTTATTGACAAACTGATCTAAGAGATGATCTGAGACACATACGCAAGTATTTATCTAACATATAGCTAGATAAGTGTGTAtgatatgaatacattataataatgtatattctgTGTTGTTACCTGGTATTGCAGTTTATATTCACAGCTTTATTTCAACAAGATTTACAGTGTGTGATGAGTGACACACAGTGGAGTTTAACCCTGACTACAGTCACACAATCTTCGTCAAGCGTGTCTTCAGCTGTGCAGGAATGTAAATAAAGAGGTTTTCCTGATAACACATGTGCAGGTGATTGTCCTGAAGACGTACAGGACATCCTTCCCCCATTTTTCTGGTTTGACACCACTGGTTAAAATATCCATTGCATATCAGTGCAGCTAAATGATCCTGATTATATAATTGCGAAAACACACATCGATATATTTTCTCCCTGAAAATCCACATTGTAATCCTGTAATACAATTCACTACTCTACCTCGACCACTGCAGTCAGAGCAGAACAGGTGCTTTTCACACACGACGAGGAGAACACACACGTCTGTATGCACTCACAAGTTATTCATATTGTTAGAACGTGTCAAAGATTTGTATCgttgtttttgtgctttgtgcGTCAGGGGTCCAGGTGTGGCTCGGCTCCGGCCGGTGTTCAGGTCCCGGGCCGGTGTCCGTTCATCCGAACCAGTGGTCGCCCATGCACTCCCGGTTCCACTCCACGCCGCACAGCCAGCACCACTCGAACCGGCACCGAGCCTGCGGACACGTCATGTGCATACAGCCCCCNNNCTTCTCCACGGGGGCCCGGCAGCGGGGACAGGGCCGGGTTGTGTTCTGGATGGTCTCCCGGGTCGCCCGCTCCCAGCTCGCCTGTCGCGCTGCCTCCTCGTCGGTGACGAAG

Function


GO:

id name namespace
GO:0070546 L-phenylalanine aminotransferase activity molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0008793 aromatic-amino-acid molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202404 lncRNA downstream 122249 17408211 ~ 17408617 (-) True G160783
TU202283 lncRNA downstream 554987 16975448 ~ 16975879 (-) True G160682
TU202234 lncRNA downstream 675909 16854653 ~ 16854957 (-) True G160640
TU202225 lncRNA downstream 713671 16816939 ~ 16817195 (-) True G160631
TU202128 lncRNA downstream 1215303 16315327 ~ 16315563 (-) True G160548
TU202475 lncRNA upstream 70091 17602081 ~ 17604562 (-) True G160842
TU202538 lncRNA upstream 276028 17808018 ~ 17810015 (-) False AMCG00001865
TU202551 lncRNA upstream 334026 17866016 ~ 17866221 (-) True G160903
TU202577 lncRNA upstream 383428 17915418 ~ 17915691 (-) True G160928
TU202598 lncRNA upstream 506714 18038704 ~ 18039374 (-) True G160944
AMCG00001845 mRNA downstream 297561 17216410 ~ 17233305 (-) True AMCG00001845
AMCG00001842 mRNA downstream 348250 17165832 ~ 17182616 (-) True AMCG00001842
AMCG00001844 mRNA downstream 376000 17153503 ~ 17154866 (-) True AMCG00001844
AMCG00001843 mRNA downstream 438317 17091353 ~ 17092549 (-) True AMCG00001843
AMCG00001834 mRNA downstream 476822 17043718 ~ 17054044 (-) True AMCG00001834
AMCG00001855 mRNA upstream 41670 17573660 ~ 17580861 (-) True AMCG00001855
AMCG00001857 mRNA upstream 51467 17583457 ~ 17584485 (-) True AMCG00001857
AMCG00001865 mRNA upstream 276055 17808045 ~ 17810097 (-) True AMCG00001865
AMCG00001863 mRNA upstream 328176 17860166 ~ 17865379 (-) True AMCG00001863
AMCG00001864 mRNA upstream 341553 17873543 ~ 17879017 (-) True AMCG00001864
TU202328 other downstream 438417 17091418 ~ 17092449 (-) False AMCG00001843
TU201878 other downstream 1828366 15693674 ~ 15702500 (-) False AMCG00001784
TU201759 other downstream 2010227 15504311 ~ 15520639 (-) True G160255
TU201753 other downstream 2029098 15499553 ~ 15501768 (-) True AMCG00001771
TU202549 other upstream 328149 17860139 ~ 17865318 (-) False AMCG00001863
TU202574 other upstream 376764 17908754 ~ 17910853 (-) True G160925
TU202858 other upstream 1303792 18835782 ~ 18850884 (-) True G161153

Expression Profile