RNA id: TU202597



Basic Information


Item Value
RNA id TU202597
length 671
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G160943
representative True

Chromosome Information


Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18038704 ~ 18039374 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


TGTTTGTTtaatagttgtgtttatttttcacagatgAACAATAGCCATATAGCGTAAGACACAATAATTCAGCAGGAGCTCAGCACAATGAAACACACACGCTCAGGAAGCTCTGAGACGGATGCAGTTGGACATCCCTCCGACAGTGGCTGGACAGATAACAACAGAGTGTGTTGCCTTCGAGGGCGTGGTTTCCATTTGTCCAGTCAGCAGCAATTTGAGAGTAATGCTTTGTCACGGAGACTTCAATAACTCTGGGTGTCAGATCTTAAGCTGCTATATTTTCCTTGTGCAAATGCTTCTGATGCTATCCACTGCTGTCTTCTAGGCCATGTCTTTATTATACCTATATTAAACACAACTGCTTTTTATTTAGTAATTCACCTATTTATAAAGTAGCAGAAAAGGGTCCCATATGACGAgtacgatgggtcgaatggcctcctctcgtttgtaaactttcttatgttcttatgttcttatatgtgTACAATGCAGACACACCTCACCCTCTCAGCTGCCCGTGTCTACTGAAGACAAGATGCGGACAAAGCGCGTTTCTAAGTTGTAATTTTATCTTGGCAAAGATGGCAAAGAAAGCGAAAGtgtcttaaaaagaaaataaagacaacacaGTGCCTGGGATCTCCCGGCTCACTGTGAGAANNNNN

Function


GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation
ko05310 Asthma

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU202592 lncRNA upstream 8888 18024196 ~ 18029816 (+) True G160939
TU202559 lncRNA upstream 121650 17916795 ~ 17917054 (+) True G160910
TU202542 lncRNA upstream 177277 17860162 ~ 17861427 (+) True G160895
TU202511 lncRNA upstream 234526 17798199 ~ 17804178 (+) True G160869
TU202403 lncRNA upstream 630088 17408257 ~ 17408616 (+) True G160782
TU202644 lncRNA downstream 179390 18218764 ~ 18219031 (+) True G160985
TU202880 lncRNA downstream 884075 18923449 ~ 18923672 (+) True G161170
TU203031 lncRNA downstream 1415714 19455088 ~ 19457752 (+) True G161282
TU203034 lncRNA downstream 1468869 19508243 ~ 19508522 (+) True G161285
TU203158 lncRNA downstream 2196803 20236177 ~ 20236391 (+) True G161392
AMCG00001868 mRNA upstream 97914 17937744 ~ 17940790 (+) True AMCG00001868
AMCG00001866 mRNA upstream 107425 17885198 ~ 17931279 (+) True AMCG00001866
AMCG00001860 mRNA upstream 239351 17794741 ~ 17799353 (+) True AMCG00001860
AMCG00001861 mRNA upstream 249917 17787746 ~ 17788787 (+) True AMCG00001861
AMCG00001859 mRNA upstream 251806 17783849 ~ 17786898 (+) True AMCG00001859
AMCG00001881 mRNA downstream 154442 18193816 ~ 18209391 (+) True AMCG00001881
AMCG00001883 mRNA downstream 170635 18210009 ~ 18216623 (+) True AMCG00001883
AMCG00001882 mRNA downstream 184680 18224054 ~ 18230265 (+) True AMCG00001882
AMCG00001875 mRNA downstream 248338 18287712 ~ 18294690 (+) True AMCG00001875
AMCG00001872 mRNA downstream 289117 18328491 ~ 18340877 (+) True AMCG00001872
TU202413 other upstream 575770 17417351 ~ 17462934 (+) True AMCG00001846
TU202141 other upstream 1666400 16369413 ~ 16372304 (+) False AMCG00001814
TU202121 other upstream 1743198 16237262 ~ 16295506 (+) False AMCG00001814
TU201717 other upstream 2599673 15432337 ~ 15439031 (+) True AMCG00001762
TU201667 other upstream 2704137 15331620 ~ 15334567 (+) False AMCG00001760
TU202633 other downstream 148528 18187902 ~ 18200855 (+) False AMCG00001881
TU202641 other downstream 177201 18216575 ~ 18217138 (+) False AMCG00001883
TU202803 other downstream 630908 18670282 ~ 18672421 (+) False AMCG00001880
TU202872 other downstream 859963 18899337 ~ 18901718 (+) True AMCG00001889

Expression Profile