RNA id: TU202718


Basic Information

Item Value
RNA id TU202718
length 1659
lncRNA type inter_gene
GC content 0.47
exon number 3
gene id G161039
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18301084 ~ 18304098 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCGGCCAGAGCCCCCGCAAATCCCCGGATGAAGTTTTCTGTGAAATCACCGCCAACCAATCAGCGCACTGCATTACGTCACTGTGAACAGTCCCGTCAATCACAGCCTCCACGTTGAGCTGCTACAATGTCGCAACCGTGGCGTCGCGATTTAATACCGAAACGTCTCCTGCTCTCTATGATCTGAATCCGAGCTGCTATCATCATTTGATCAGTCTACACTTGAGAACACAGAGGACTGTTTTCTTACAGCTGGCTGGGGTATTAGAGATAACGGTGGTTGTGGTTCAACACCAAAACAAAGGGTCTAGAATGTCACACATTTTGATAGGCCGATCTGCTGTGTTTGTTCTGCTGCGTAATGGATCTCGGCGCTCTGGACAGGAAATGACTTCATCGCCGAAGAGTGAAGCGGCTGTTCCTCTTCGCCGTGTCCCACCTTGTGGTTTGTGGATCCCGCAGTCCTCTTTGCTCTGAGCTGACGagaacagattttaatttattattttaatgtctatCTCATGTGTTTGGAATTTATCGCAGAAAAACAGACTGCAGACTCTATCTAATTTGGCGAAATCCACAGAGAGGTGCTTAGGAACATGTGACTGCTTTAATTAGTATGTAGATCATATGAATGCGCTTGGAGATCTTGTCTTTTCCACATAGCGTCCATGGGGGAACTTGGGAAGGGATTGCGTGACACGTTCGCCCTAAAATCAGACGAAAACCGTTATTTTTTACATACTCTACTCGTCCTGTGGAACTGAAATGCATCGATGCTCGTTTGACTGTCTCTTAAACTTCTTAAACCACTGGTGAGGATTTGGGGAATTAACGTTTTTCAACCAAGAATGTGTTTTGAAGATGTGGCTCCAGTACTTACAGAGGACGCTCTCGTCCTGACTGACGCCCAACGTTGCGATGGGGTGCGAGGCGTGCACCGCCCTACCTCAAAGGCAACCTGGACGGCCTGCCTTGCTGGGTCCCCAGTGGGACACACATCCGGGGACAGAGACAGGCTTTCATGAAATGTCACCACCGCCACAGCCGCACACGGGGAGGCCTGGTGGGAGGGGGGTATGACAGAAATAGCCCCCGTTTGAAGTGGGGATGGAGACTTTAATGCTCAGAAGATGGCCAGGCAGGGTAAGACATCCCCTCCGGGTCCAGATATCACACAATGCCACGGGAGGCCGTCCCCACAACCGCctcactttcttttcttttcctgctATTCAAAGATAATGATAATACGACATATAAAAGAGGAGGATTAGCTTTCGTTCAAAGGGTTCGGGGGGAGATGGCCGGGCTCGTGTGTCAGAACAAAGACACGTTTTATTTGAGTCTCGGAACAAACAATTCAGATAAACAAATCGGAttatttaacatacatatatatgttactgtgtgtgttacTATTATTCCTGCACAATCTGCCACCTCAGGCTGATCTTTCTTATACACTATAggaacacacaaagacacataaaaccatGATTTCAGAACGAGTGGGACCTTTCTTTTAACTGAGTTTAGCTGTACATTTACCTTTAGGGTAATGATTGACACAAGGTCATGGTTCGTTTTAGCGGTAATGACCGAGTATGCGAATTGTGACatgatgaaaatatattatatatttagcctCTGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202598 lncRNA downstream 261710 18038704 ~ 18039374 (-) True G160944
TU202577 lncRNA downstream 385393 17915418 ~ 17915691 (-) True G160928
TU202551 lncRNA downstream 434863 17866016 ~ 17866221 (-) True G160903
TU202538 lncRNA downstream 491069 17808018 ~ 17810015 (-) False AMCG00001865
TU202475 lncRNA downstream 696522 17602081 ~ 17604562 (-) True G160842
TU202859 lncRNA upstream 538878 18842976 ~ 18850884 (-) False G161153
TU202869 lncRNA upstream 582196 18886294 ~ 18887568 (-) True G161161
TU202874 lncRNA upstream 595049 18899147 ~ 18901718 (-) True G161165
TU202931 lncRNA upstream 780014 19084112 ~ 19084976 (-) True G161206
TU203051 lncRNA upstream 1151026 19455124 ~ 19457742 (-) True G161302
AMCG00001884 mRNA downstream 22192 18232030 ~ 18278892 (-) True AMCG00001884
AMCG00001885 mRNA downstream 77332 18216946 ~ 18223752 (-) True AMCG00001885
AMCG00001870 mRNA downstream 113101 18135097 ~ 18187983 (-) True AMCG00001870
AMCG00001871 mRNA downstream 170917 18128714 ~ 18130167 (-) True AMCG00001871
AMCG00001867 mRNA downstream 354573 17938913 ~ 17946511 (-) True AMCG00001867
AMCG00001876 mRNA upstream 53935 18358033 ~ 18363257 (-) True AMCG00001876
AMCG00001878 mRNA upstream 267950 18572048 ~ 18576564 (-) True AMCG00001878
AMCG00001879 mRNA upstream 356904 18661002 ~ 18663390 (-) True AMCG00001879
AMCG00001887 mRNA upstream 402025 18706123 ~ 18719975 (-) True AMCG00001887
AMCG00001893 mRNA upstream 584353 18888451 ~ 18898999 (-) True AMCG00001893
TU202574 other downstream 390231 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 435766 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 769094 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 1208635 17091418 ~ 17092449 (-) False AMCG00001843
TU201878 other downstream 2598584 15693674 ~ 15702500 (-) False AMCG00001784
TU202858 other upstream 531684 18835782 ~ 18850884 (-) True G161153

Expression Profile