RNA id: TU202858


Basic Information

Item Value
RNA id TU202858
length 3804
RNA type TUCP
GC content 0.47
exon number 3
gene id G161153
representative True

Chromosome Information

Item Value
chromosome id CM030143.1
NCBI id CM030143.1
chromosome length 20516281
location 18835782 ~ 18850884 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGTCACAGAGCAAAGTAGGATCAGTATGCTTTAATAAGAGATCAGTGcagaaatacaactttttttattGGGTTAAAGTTCCCATACAGtcataataattgtaataatgataattgtcAATATGAATTCAGCAATATAGTCATAAACTGTTAATTTCAGTAGCTAGTGTAACTATAAGGTCTCAGATGTTATCAGAAGCAGAGAATTTGCAAAGACAAAGCCCCCGTAACATGGACTCGAATGCTGATATTGTCTTTAagcttgtaaaaaaacaaacaaaacaaaacacaaattgaaGGATGCACGTCAAagccagtgtttgtgtttactgGACCCCTTCAAGTGCGTCACGATGTCCTACAGCGGACCGGCTGCCTTCGCTCCGCTACGCCCTGTCAACGTGCCTCCGCTCTTCTCACTTACTAGAGCACAGTTCGTCTCGCTCTCAGGGACTCTCTTCCCCCGAGTCTCGTGTTTGGCAGGAGGGTATCCGCCGTGAGAAGTGTGCCGAGGGGTGGTAGGGGCCACACAGGGGCCCGGCCCGTTCTGTCGGCGGTCTTATGTTATGTTGGATGACGCAGGTGTGCCGAACTGTCGCTCACACGGATTCCTGTCTGGAAATTCAAGTGTCTCTGCGTTGTCCCCCCACGTGTGTCTTTTCCCTGCACCCTCAGCTCTCTATTGAAGCTCCCGGCCGTTTCCCTTCACTCTGAGCGCCCAGTGTGTGAATCCCCGCTCAGTCACGGACCACATGGCTGTGAGAAACTCCCCGCCCCGTGGACTGGACTGCGGCACACACGGTAGGGATCAGCCCCTAAATGTCCGCTTACGAATACCCCCCgtttatgaaaacaatattatgtTAATACTTATTTATAGCTGATTTGCCATTCCCAGGCATCAAACACGGTCTCTGCTCCCGTTGCATTAATCGGTAGCGTCTCCGTTCCTCTACGCCTTCCCTGATGTCAATGAAAGGAAGCTGTGATCCGtctctcacagttttcacagaCTGAACGGTTCTCCCTGGTACACTGAAGGACCGTCACCAAGACCAGGTCCCCAATAATCTACCCAAAAAGCAACCAAATGATGTGTGAGcgggaggaaaaaaacaaataagatgaATTCCTTGAAACCTCAACAAATAAGACCTCAATCTTAATTCACAGTTCAGTTTCAGACCTACATCTCTGTGTCTACGCgtcagctgggaccatagtatAGACACAGTCATGacccacataaaataaaataaataaatgagaactTCTCTCCATATGCAATTCATGCCCCAATATACCCAGTCTGTGTGCAATACTGGCTTATCACCACCTCATCTTTTTGTTCTCACAGACATTAATGTAACTCTTATCTCACGGAAATAGAAATGTTATCTttagctgcatttgttttagagGAACCTTTTCAATGGATTTCCAGAATTTAAAGGAtctgaaaagataaataaaaatgaaaagagcAAATCCCGAGATGCGAGGTTCTGCCGGGCGTTGATTATGCGCTGTGATCGGCACTATCTAACAAGTCCTTATTAGTACAAAAGAAATGCTTTACCTGTGAGGAGACGACGCACTTGAAGGGAGCGTTAAAGACAATCTCAGCACGTACAGAATACAGCATGTTAATAAAGCCGGATCCCAGGAATGTTctaaaaaatctttaaaaaataaatgcaagtttGTTATACATCTACGAAGCACCATCACGTTAATATTCTCAAGTGAAGTAGTTCtgtatgtcattttttttatacattaatctGCTACATGTCTAGAGTGGAACACAAAGAGATCAATcctttatttcttctttgtaaAGATTAGTAGTACTGGCCCTGTGACAAGGTTATGCGTTCACATCCTAAAATGCCATGATCACAAACACGGAACAGGAAAAAAGGACGAACAGCACTACCGAGAGTGGAGAGACCCACTTCTcatatattaaaagcaaaaacaagaatCCACTCTGCATCTACTGGGTAGATAATACAAAGTACCAAGGCACGTGAAGACTAAACACTATCATAAAAATCTCTGCCAGCTCgatattctgttttttaaaatcgTATACATAGTTTTATTATATGAAATTGGCCACCATACAAAGACAGTTCAACAAAAGCAACAGCTGTGCCACTTTCTCAGTGTCCACATCGCGGGGCGCCACCTGGTAGTTCAGCGTCAGGTCggggggaagagggagaggatgGGCAGGGGGTTGTGCACAGACTGGACTGTCGCTCTGTCCGTCTCTACAGGCGGCAACATTGTGGCACTGGCCGCCTACGCAGAGGCGTAACTCAACCGAACGGCAGAGCCGGGGACGGGGacaggaggagaggggagagggaggggagacagattgtgtttattatagtttttttagttttttggggggaagggagagagggaggagaaggggaAGAAATAACACCTTCATTACAACAGAGAAAACGTTACAGTAGATCAAGGAAATATAGAAtgtctcatttattttctcctttaaaaaaaacaaccaaaaacaaccGGTACTGGTGGGAGAGATCCCAGAGAAGGCCACtgtttgggggggagggggttgggtCTTGATACGTGGACACACTGGACAAGTAAAatcttttatattaatattagaaaTCATCTAATTGCCCaaaaatagatagatatatatttaaaaaataataataaaataacagaagcTGCTCTTCGGGACAGAGGCTGGCGTCCGCAGAGGGGAGGCCCAGGCCGGACCGGCTCAGGAGGCCTGGTCCAGAGCACGGAGCAGGTCGCTCCCCTGCAGCAGGTTCAGCTGGCCCTGCAGGGGGATGTTGACCTCGCAGTCGTATCTCGTCAGCTCGGGCAGGGAGTACGGCTCGAACGAGGGGCCCAGCAGCCGGCTCACCACGCCTGCGGGGAAACGAGTAAGGAAAACACGAGAGGGAAACTTGTCCTTGTGTCCAGATGACATCATACTGTAATTCCTACAGCAGGATAAGACATAACTGCTGGAGTCTCAGTCCTAAGTGCAATCACAGGACAACGACAGCATCGGATTCCAAGACCCAACACATGGACTCATTTACATACAATGAAACTAAATTACAGGCATACAAAGTTCATTCTGTAAGCAGCGCTGATAAGAGCCACAGAGCCGTCCCCAGTGGTTTACACCAGGGGGGCGTCGCTCTGCAGCCGTGGTTATCAGGAGCTGCAGATAAGCAgattcccacacacacacacacacacacacacacacacacagccagcggGACACGAGTCAGAGATGCGTCTACGAACATCCTCCCCACGGGCACACGTCCCTCGCACACTTTGGGTTCCCAGGGGCCCCCGCTGAGGCGTGCGTACCTGTTTTGAGGCTGAGGTTCTCTCGGATCTCCTCGTGGTCGCAGGGGTGAGTGAAGTCGAAGATGCTGTGTCCGGTCAGCTCCACCTGGGGAAGAGAAAACTGCTTTAACTCCCAACTCTCCGCTGCCGTGCTCACGTGGGGTGAGATTCACCGTCTCCGGTAAAGGGGCTCCCTCTCTTTAAATAAACGTGCGGATAAAAGCACGCCTGCCTGGCCACGGGACACGGGTGACCCGACCGAGGAGCCATCTGTGCGGTGGCAGGATTACTAATGACATCACCACTCAGACGGACTCAAAATCAAATTAGTTTGCTGCCGAATACAGTGTTAAATAATGTCCTGTTCAGTTTGAGTTTTGAGTTGTATTTTTCCcttgaattaataaaaatgcaagaacTGTGAAAGAGCG

Function

GO: NA

KEGG:

id description
ko04744 Phototransduction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU202707 lncRNA downstream 489760 18262244 ~ 18346022 (-) True G161030
TU202718 lncRNA downstream 531684 18301084 ~ 18304098 (-) True G161039
TU202598 lncRNA downstream 796408 18038704 ~ 18039374 (-) True G160944
TU202577 lncRNA downstream 920091 17915418 ~ 17915691 (-) True G160928
TU202551 lncRNA downstream 969561 17866016 ~ 17866221 (-) True G160903
TU202869 lncRNA upstream 35410 18886294 ~ 18887568 (-) True G161161
TU202874 lncRNA upstream 48263 18899147 ~ 18901718 (-) True G161165
TU202931 lncRNA upstream 233228 19084112 ~ 19084976 (-) True G161206
TU203051 lncRNA upstream 604240 19455124 ~ 19457742 (-) True G161302
TU203098 lncRNA upstream 1241229 20092113 ~ 20093345 (-) True G161346
AMCG00001887 mRNA downstream 115807 18706123 ~ 18719975 (-) True AMCG00001887
AMCG00001879 mRNA downstream 172392 18661002 ~ 18663390 (-) True AMCG00001879
AMCG00001878 mRNA downstream 259218 18572048 ~ 18576564 (-) True AMCG00001878
AMCG00001876 mRNA downstream 472525 18358033 ~ 18363257 (-) True AMCG00001876
AMCG00001884 mRNA downstream 556890 18232030 ~ 18278892 (-) True AMCG00001884
AMCG00001893 mRNA upstream 37567 18888451 ~ 18898999 (-) True AMCG00001893
AMCG00001892 mRNA upstream 54311 18905195 ~ 18910940 (-) True AMCG00001892
AMCG00001891 mRNA upstream 124147 18975031 ~ 18979293 (-) True AMCG00001891
AMCG00001902 mRNA upstream 189569 19040453 ~ 19042847 (-) True AMCG00001902
AMCG00001903 mRNA upstream 199418 19050302 ~ 19052311 (-) True AMCG00001903
TU202574 other downstream 924929 17908754 ~ 17910853 (-) True G160925
TU202549 other downstream 970464 17860139 ~ 17865318 (-) False AMCG00001863
TU202450 other downstream 1303792 17530866 ~ 17531990 (-) True G160817
TU202328 other downstream 1743333 17091418 ~ 17092449 (-) False AMCG00001843
TU201878 other downstream 3133282 15693674 ~ 15702500 (-) False AMCG00001784

Expression Profile